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Lag0035684 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035684
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr3:27075387..27077291
RNA-Seq ExpressionLag0035684
SyntenyLag0035684
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035255.1 choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa]1.0e-0634.12Show/hide
Query:  DSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLIQVIWKDTYPKKIKFF
        D  W++   RNL++ E  +W  L  +L  +  + + D W W L  NG+FS+KSL  D+        + L   IW D YPK+   F
Subjt:  DSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLIQVIWKDTYPKKIKFF

KAA0045138.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-0533.33Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLS-SHLETQLIQVIWKDTYPKKIKF
        K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  F   S K+L++   D S      +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLS-SHLETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

KAA0047098.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.7e-0533.33Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF
        K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  F   S K L++   D S      +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

KAA0051757.1 pol protein [Cucumis melo var. makuwa]3.3e-0530.39Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKS----LMADMGDLSSHLETQLIQVIWKDTYPKKIKF
        K+  VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  FS  S    +   +         +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKS----LMADMGDLSSHLETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

XP_008446987.1 PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo]5.7e-0533.33Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF
        K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  F   S K L++   D S      +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

TrEMBL top hitse value%identityAlignment
A0A1S3BGD2 uncharacterized protein LOC1034895302.8e-0533.33Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF
        K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  F   S K L++   D S      +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

A0A5A7T1C2 Choline-phosphate cytidylyltransferase5.0e-0734.12Show/hide
Query:  DSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLIQVIWKDTYPKKIKFF
        D  W++   RNL++ E  +W  L  +L  +  + + D W W L  NG+FS+KSL  D+        + L   IW D YPK+   F
Subjt:  DSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLIQVIWKDTYPKKIKFF

A0A5A7TQI1 LINE-1 retrotransposable element ORF2 protein9.5e-0633.33Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLS-SHLETQLIQVIWKDTYPKKIKF
        K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  F   S K+L++   D S      +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLS-SHLETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

A0A5A7UBH7 Reverse transcriptase1.6e-0530.39Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKS----LMADMGDLSSHLETQLIQVIWKDTYPKKIKF
        K+  VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  FS  S    +   +         +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKS----LMADMGDLSSHLETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

A0A5D3C104 LINE-1 retrotransposable element ORF2 protein2.8e-0533.33Show/hide
Query:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF
        K   VKD WN  D+ W+++  R L D E  +W ++  IL     ++ +    W   +N  F   S K L++   D S      +L+++IWK T P KIKF
Subjt:  KNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPLSTNGHF---STKSLMADMGDLSSH-LETQLIQVIWKDTYPKKIKF

Query:  FL
        F+
Subjt:  FL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGCTCACCAGAACGAAGTCGTGGGTCATCGGAGGTTGTGTGGGCAGGTTCGTTGCGAATGAAAGCATAGGTTCATTGGATCAAGACTATGATGGAGGCGGCGT
TGCGTTCGTCGGAACAGTGGTGGAAAATAATGGTGGTGAGATGCTGTCTCGATGCAAAAATTCCATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTC
TGTTGGTTAGGAACTTGAAAGACGACGAAGGTGTTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTT
AGCACAAACGGCCACTTCTCCACAAAGTCTTTGATGGCGGATATGGGAGACTTATCCTCCCATTTGGAGACTCAACTAATTCAGGTTATTTGGAAAGATACATACCCAAA
GAAGATCAAATTCTTCCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGCTCACCAGAACGAAGTCGTGGGTCATCGGAGGTTGTGTGGGCAGGTTCGTTGCGAATGAAAGCATAGGTTCATTGGATCAAGACTATGATGGAGGCGGCGT
TGCGTTCGTCGGAACAGTGGTGGAAAATAATGGTGGTGAGATGCTGTCTCGATGCAAAAATTCCATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTC
TGTTGGTTAGGAACTTGAAAGACGACGAAGGTGTTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTT
AGCACAAACGGCCACTTCTCCACAAAGTCTTTGATGGCGGATATGGGAGACTTATCCTCCCATTTGGAGACTCAACTAATTCAGGTTATTTGGAAAGATACATACCCAAA
GAAGATCAAATTCTTCCTTTAG
Protein sequenceShow/hide protein sequence
MDQLTRTKSWVIGGCVGRFVANESIGSLDQDYDGGGVAFVGTVVENNGGEMLSRCKNSMVKDVWNKNDSFWDLLLVRNLKDDEGVEWTELSFILEPIVLSQATDLWKWPL
STNGHFSTKSLMADMGDLSSHLETQLIQVIWKDTYPKKIKFFL