; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035703 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035703
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr3:27710639..27713681
RNA-Seq ExpressionLag0035703
SyntenyLag0035703
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015385574.1 uncharacterized protein LOC107176927 [Citrus sinensis]1.5e-1146.94Show/hide
Query:  GTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQ------------PKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK
        G S +E +K L  ++ QF + T+ +IQNL NQ++QL T VS++K++  G+LP+Q             KD L+ FRKVKVNIPLL+AI +IP Y K LK
Subjt:  GTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQ------------PKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK

XP_019104822.1 PREDICTED: uncharacterized protein LOC104893307 [Beta vulgaris subsp. vulgaris]1.4e-0932.5Show/hide
Query:  RQLAVPDLNQQPLCI-TYPETTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP-----------------------
        +Q   P    QP+ +    ++ G S ++ +K +  S+LQF ++T + ++NL NQ++QL     +++ +SS  LP+QP                       
Subjt:  RQLAVPDLNQQPLCI-TYPETTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP-----------------------

Query:  ----------------KDDLDVFRKVKVNIPLLEAILKIPAYAKFLKTCHLNV--LDGEE
                        K+ LDVFRKV+VNIPLLEAI ++P YAKFLK    N   L+G+E
Subjt:  ----------------KDDLDVFRKVKVNIPLLEAILKIPAYAKFLKTCHLNV--LDGEE

XP_027109067.1 uncharacterized protein LOC113728915 [Coffea arabica]2.0e-0835.11Show/hide
Query:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPA--------QPKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK--TC
        TT T   + ++ L +S+ QF + T   ++++  +++Q+ T ++++++   GK P+        + K+ LDVFRKV++NIPLL+AI +IP  AKFLK    
Subjt:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPA--------QPKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK--TC

Query:  HLNVLDGEEVKRPNCVETGLNFDTESQRLKP
        H   L G+E      V  G N  T  QR  P
Subjt:  HLNVLDGEEVKRPNCVETGLNFDTESQRLKP

XP_027120412.1 uncharacterized protein LOC113737367 [Coffea arabica]4.4e-0833.08Show/hide
Query:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP-----------------------------KDDLDVFRKVKVNI
        T      +  + LT+S+ QF + T   ++++  +I+QL T ++++++ + GKLP+QP                             K+ LDVFRK+++NI
Subjt:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP-----------------------------KDDLDVFRKVKVNI

Query:  PLLEAILKIPAYAKFLK--TCHLNVLDGEE
        PLL+AI +IP YAKFLK    H   L G+E
Subjt:  PLLEAILKIPAYAKFLK--TCHLNVLDGEE

XP_031254321.1 uncharacterized protein LOC116112302 [Pistacia vera]7.5e-0832.81Show/hide
Query:  ETTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQ----PKDD-----------------------------------
        +++ +S ++ +K L +++ QF + T ++IQNL NQ+ Q+ T +S ++ +  GKLP+Q    PK++                                   
Subjt:  ETTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQ----PKDD-----------------------------------

Query:  LDVFRKVKVNIPLLEAILKIPAYAKFLK
        L++FRKV+VNIPLL+AI ++P YAKFLK
Subjt:  LDVFRKVKVNIPLLEAILKIPAYAKFLK

TrEMBL top hitse value%identityAlignment
A0A2Z6N3A1 Integrase catalytic domain-containing protein8.1e-0831.54Show/hide
Query:  ERTLRQLAVPDLNQQPLCITYPETTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKN-KSSGKLPAQ--------------------
        ++ +  L  P  N      T   T G S ++ +K++  ++LQF ++T ++IQ L  QI QL T ++ M+  + S +LPAQ                    
Subjt:  ERTLRQLAVPDLNQQPLCITYPETTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKN-KSSGKLPAQ--------------------

Query:  -----------------PKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK
                          ++ LDVFRKV VNIPLL+ I ++P YAKFLK
Subjt:  -----------------PKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK

A0A5D3CJ21 Retrotransposon gag protein1.4e-0740.59Show/hide
Query:  GTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP---------------KDDLDVFRKVKVNIPLLEAILKIPAYAKFL
        GT+ ++ +K LT  +L F        Q +  Q+TQL T +SKM  K  GKLPAQP               ++ L++FRKV++N+P L+AI ++P YAKFL
Subjt:  GTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP---------------KDDLDVFRKVKVNIPLLEAILKIPAYAKFL

Query:  K
        K
Subjt:  K

A0A6P6W3P0 uncharacterized protein LOC1137290206.2e-0833.9Show/hide
Query:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP------------------------------KDDLDVFRKVKVN
        T+ T   +  + L  S+ QF ++T   I+NL  QI+ + T +++++++   KLP+QP                              K+ LDVFRK+++N
Subjt:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP------------------------------KDDLDVFRKVKVN

Query:  IPLLEAILKIPAYAKFLK
        IPLLEAI ++P YAKFLK
Subjt:  IPLLEAILKIPAYAKFLK

A0A6P6W4J2 uncharacterized protein LOC1137289159.6e-0935.11Show/hide
Query:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPA--------QPKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK--TC
        TT T   + ++ L +S+ QF + T   ++++  +++Q+ T ++++++   GK P+        + K+ LDVFRKV++NIPLL+AI +IP  AKFLK    
Subjt:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPA--------QPKDDLDVFRKVKVNIPLLEAILKIPAYAKFLK--TC

Query:  HLNVLDGEEVKRPNCVETGLNFDTESQRLKP
        H   L G+E      V  G N  T  QR  P
Subjt:  HLNVLDGEEVKRPNCVETGLNFDTESQRLKP

A0A6P6X3M4 uncharacterized protein LOC1137373672.1e-0833.08Show/hide
Query:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP-----------------------------KDDLDVFRKVKVNI
        T      +  + LT+S+ QF + T   ++++  +I+QL T ++++++ + GKLP+QP                             K+ LDVFRK+++NI
Subjt:  TTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQP-----------------------------KDDLDVFRKVKVNI

Query:  PLLEAILKIPAYAKFLK--TCHLNVLDGEE
        PLL+AI +IP YAKFLK    H   L G+E
Subjt:  PLLEAILKIPAYAKFLK--TCHLNVLDGEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAAGAACTTTAAGGCAACTGGCAGTGCCAGATTTGAACCAGCAGCCACTCTGTATTACCTACCCCGAGACTACAGGCACATCCTTCGATGAGGCACTTAAGAA
GCTTACTGTTAGCTCTTTACAGTTCCACAAAAAGACCAGCAACGCCATTCAGAATTTGGGAAACCAAATTACTCAGCTGGTAACCAAAGTCAGTAAGATGAAGAATAAAA
GCTCTGGTAAACTGCCTGCCCAACCTAAAGATGATTTAGATGTGTTTAGAAAAGTTAAAGTGAATATTCCGTTGCTTGAGGCAATCCTGAAAATCCCAGCCTATGCTAAA
TTCTTAAAGACTTGCCATCTCAATGTCTTGGACGGAGAGGAGGTGAAGAGACCCAATTGTGTTGAAACGGGCCTGAATTTTGACACTGAAAGCCAAAGATTGAAGCCCCG
AACCAAGAAGAAGCGAGATAAGACTGAGAAAAGGAGCAGGAAGTCGAGATTAGAGGCTGGCGTCGAGACGCCAACGCGACTTCAGGCTGAAGACAATAGTTCGCAGCGTC
GAGATGCTCTGCCCTGGCGTCTCAACGCTGACACGTTTTCTATAAATATTAGGTCTCGGTTTAGTCCGCCGTTAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAAGAACTTTAAGGCAACTGGCAGTGCCAGATTTGAACCAGCAGCCACTCTGTATTACCTACCCCGAGACTACAGGCACATCCTTCGATGAGGCACTTAAGAA
GCTTACTGTTAGCTCTTTACAGTTCCACAAAAAGACCAGCAACGCCATTCAGAATTTGGGAAACCAAATTACTCAGCTGGTAACCAAAGTCAGTAAGATGAAGAATAAAA
GCTCTGGTAAACTGCCTGCCCAACCTAAAGATGATTTAGATGTGTTTAGAAAAGTTAAAGTGAATATTCCGTTGCTTGAGGCAATCCTGAAAATCCCAGCCTATGCTAAA
TTCTTAAAGACTTGCCATCTCAATGTCTTGGACGGAGAGGAGGTGAAGAGACCCAATTGTGTTGAAACGGGCCTGAATTTTGACACTGAAAGCCAAAGATTGAAGCCCCG
AACCAAGAAGAAGCGAGATAAGACTGAGAAAAGGAGCAGGAAGTCGAGATTAGAGGCTGGCGTCGAGACGCCAACGCGACTTCAGGCTGAAGACAATAGTTCGCAGCGTC
GAGATGCTCTGCCCTGGCGTCTCAACGCTGACACGTTTTCTATAAATATTAGGTCTCGGTTTAGTCCGCCGTTAGGTTAG
Protein sequenceShow/hide protein sequence
MAERTLRQLAVPDLNQQPLCITYPETTGTSFDEALKKLTVSSLQFHKKTSNAIQNLGNQITQLVTKVSKMKNKSSGKLPAQPKDDLDVFRKVKVNIPLLEAILKIPAYAK
FLKTCHLNVLDGEEVKRPNCVETGLNFDTESQRLKPRTKKKRDKTEKRSRKSRLEAGVETPTRLQAEDNSSQRRDALPWRLNADTFSINIRSRFSPPLG