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Lag0035721 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035721
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr3:28496441..28496935
RNA-Seq ExpressionLag0035721
SyntenyLag0035721
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1748.67Show/hide
Query:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS
        +YN L E      P  ++ +VM+T+  T E+++ E+++ +N LMKA+EE+D +I  +KN IE+++AAESS  H  KN NKGK IM + QPQ STS+ASLS
Subjt:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS

Query:  IQKLQDMITNCIR
        +Q+LQ+MI N I+
Subjt:  IQKLQDMITNCIR

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]4.1e-1751Show/hide
Query:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR
        P  ++ +VM+T+  T E+++ E+++ +N LMKA+EE+D +I  +KN IE+++AAESS  H  KN NKGK IM + QPQ STS+ASLS+Q+LQ+MI N I+
Subjt:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR

KAA0050337.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-1747.79Show/hide
Query:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS
        +YN L E      P  ++ +VM+T+  T E+++ E+++++N LMKA++E+D +I  +KN IE+++AAESS IH  KN NKGK IM + QPQ STS+ASLS
Subjt:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS

Query:  IQKLQDMITNCIR
        +Q+LQ++I N I+
Subjt:  IQKLQDMITNCIR

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-1752Show/hide
Query:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR
        P  ++ +VM+T+  T E+++ E+++ +N LMKA+EEKD +I  +KN IE+++AAESS  H  KN NKGK IM + QPQ STS+ASLS+Q+LQ+MI N I+
Subjt:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR

KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-1754.26Show/hide
Query:  TVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR
        +VM+T+  T E+++ E+++ +N LMKA+EE+D +I  +KN IE+++AAESS  HI KN NKGK IM + QPQ STS+ASLS+Q+LQ+MI N I+
Subjt:  TVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein6.8e-1848.67Show/hide
Query:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS
        +YN L E      P  ++ +VM+T+  T E+++ E+++ +N LMKA+EE+D +I  +KN IE+++AAESS  H  KN NKGK IM + QPQ STS+ASLS
Subjt:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS

Query:  IQKLQDMITNCIR
        +Q+LQ+MI N I+
Subjt:  IQKLQDMITNCIR

A0A5A7TZU9 Ribonuclease H2.0e-1751Show/hide
Query:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR
        P  ++ +VM+T+  T E+++ E+++ +N LMKA+EE+D +I  +KN IE+++AAESS  H  KN NKGK IM + QPQ STS+ASLS+Q+LQ+MI N I+
Subjt:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR

A0A5A7U5H1 Ty3-gypsy retrotransposon protein8.9e-1852Show/hide
Query:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR
        P  ++ +VM+T+  T E+++ E+++ +N LMKA+EEKD +I  +KN IE+++AAESS  H  KN NKGK IM + QPQ STS+ASLS+Q+LQ+MI N I+
Subjt:  PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR

A0A5A7U7I7 Ty3-gypsy retrotransposon protein1.5e-1747.79Show/hide
Query:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS
        +YN L E      P  ++ +VM+T+  T E+++ E+++++N LMKA++E+D +I  +KN IE+++AAESS IH  KN NKGK IM + QPQ STS+ASLS
Subjt:  KYNPLFE------PDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLS

Query:  IQKLQDMITNCIR
        +Q+LQ++I N I+
Subjt:  IQKLQDMITNCIR

A0A5A7UU70 Ty3-gypsy retrotransposon protein2.6e-1754.26Show/hide
Query:  TVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR
        +VM+T+  T E+++ E+++ +N LMKA+EE+D +I  +KN IE+++AAESS  HI KN NKGK IM + QPQ STS+ASLS+Q+LQ+MI N I+
Subjt:  TVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQIENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTAAGACATCTCCAATGATTGCTGCCATGGGAAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCATAT
CATTGCAAGCGATGAAATAACATTGCAAGGGGCATGTACTGATGACAAGTTTCTTATGAAGTATAACCCCTTGTTTGAGCCTGATTCTGACGTAGAAACTGTCATGATGA
CTGAGACAAGGACTATGGAAGAAAAAATTGTTGAAATGCAGGAACATATCAACACCTTGATGAAAGCGATTGAAGAAAAAGATTCTCAAATTGAGCACGTAAAGAACCAG
ATTGAGAATCAAAATGCCGCTGAATCAAGTCAAATCCATATTGCAAAAAATCACAACAAAGGAAAGACTATCATGCATGATGATCAGCCACAATGTTCCACTTCAGTCGC
TTCACTATCCATCCAGAAACTCCAAGATATGATCACAAACTGTATCAGAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTAAGACATCTCCAATGATTGCTGCCATGGGAAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCATAT
CATTGCAAGCGATGAAATAACATTGCAAGGGGCATGTACTGATGACAAGTTTCTTATGAAGTATAACCCCTTGTTTGAGCCTGATTCTGACGTAGAAACTGTCATGATGA
CTGAGACAAGGACTATGGAAGAAAAAATTGTTGAAATGCAGGAACATATCAACACCTTGATGAAAGCGATTGAAGAAAAAGATTCTCAAATTGAGCACGTAAAGAACCAG
ATTGAGAATCAAAATGCCGCTGAATCAAGTCAAATCCATATTGCAAAAAATCACAACAAAGGAAAGACTATCATGCATGATGATCAGCCACAATGTTCCACTTCAGTCGC
TTCACTATCCATCCAGAAACTCCAAGATATGATCACAAACTGTATCAGAGCTTAG
Protein sequenceShow/hide protein sequence
MSFKTSPMIAAMGNFYTGSTTYCCFNEMRLQEDKAHIIASDEITLQGACTDDKFLMKYNPLFEPDSDVETVMMTETRTMEEKIVEMQEHINTLMKAIEEKDSQIEHVKNQ
IENQNAAESSQIHIAKNHNKGKTIMHDDQPQCSTSVASLSIQKLQDMITNCIRA