CuGenDBv2

Gene ID	Lag0035722
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr3:28566237..28570330
RNA-Seq Expression	Lag0035722
Synteny	Lag0035722
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

6.3e-49

75.17

Show/hide

Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

6.3e-49

75.17

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Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

TYK02840.1 gag/pol protein [Cucumis melo var. makuwa]

6.3e-49

75.17

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Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]

6.3e-49

75.17

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Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

TYK28885.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-48

74.48

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Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KA+DLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZD0 Gag/pol protein

3.0e-49

75.17

Show/hide

Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

A0A5A7UYE8 Gag/pol protein

3.0e-49

75.17

Show/hide

Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

A0A5D3BUN8 Gag/pol protein

3.0e-49

75.17

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Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

A0A5D3CYF4 Gag/pol protein

3.0e-49

75.17

Show/hide

Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KAMDLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

A0A5D3DZX8 Gag/pol protein

6.8e-49

74.48

Show/hide

Query:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN
        + EAT  STRVVDE GPS+R V E+++S QS P   +   RRSGR+V QP  YLGLTETQVVIPDDGVEDPLSY QAMND+DK +W KA+DLEMESMYFN
Subjt:  MREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGELRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFN

Query:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
         VWELVD PEGVKPIG K IYKRKRD+AGKVQTFK  LVAKGYTQ
Subjt:  QVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.7e-07

34.91

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Query:  LRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFNQVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LV
        LRRS R  ++ + Y   +   V+I DD   +P S  + ++  +K++  KAM  EMES+  N  ++LV+ P+G +P+  K ++K K+D   K+  +K  LV
Subjt:  LRRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFNQVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LV

Query:  AKGYTQ
         KG+ Q
Subjt:  AKGYTQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.3e-07

38.96

Show/hide

Query:  EDPLSYHQAMNDIDKHEWAKAMDLEMESMYFNQVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ
        ++P +Y++A   +    W  AMD E+ +M     WE+   P   KPIG K +YK K ++ G ++ +K  LVAKGYTQ
Subjt:  EDPLSYHQAMNDIDKHEWAKAMDLEMESMYFNQVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKI-LVAKGYTQ

Sequences

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CDS sequence

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ATGCATTCTTCTGCTGTTAGATGCCCTGACTTAGATGGAGAATTGATTGATGTAGTTGATGAACACCAGATAACCCTTACTGATAAATCTGGTGGACCACCAAGTGTTCA
TCTTCTAGGATTAGGGTTGAGCGCATTTTCTCCATGCAACCCCCCCTCGTTCTTCAACTTCCCAGCCACACCCTCTTTCACTCTCTCGTTTGCGCCGCCACAACCCACCA
GCTCCCTCACGTTTCTTCTCTTTTGCGCACACCAGGAGCTCCCCGCCTTGCGACGCCGCCTATTCCCTTTTCCCCCTCGTTTTCGCGCAACCAGCCACCTTTCATTCCCT
TCCTTTTGCGCGCAGCCACGACCACCTCGACGGACCGCCACAGCTGTGCGTTGCCGCCTCGTGAACGAGCTCCCCGATGAAGATTCGGCCAGGCGCGAGCGAAACCGCGG
TCTCTTGTGCGTTTTCTGTCCACAACTTGGCGCACGCGATTTCGACAAGGATCCTCGCCAATTACATGGTTCACCGATTCTCCTTGCACGCGACTTGAGTTCCCAGCCAA
CTGCAACATTGGTCTTTCCTCTTTTTGGTAAGCCCTTACAACCACGAAACAACAAGGATTTGAAGCTGTACGACGAGGTTCCAGTGCCTCGGGTAAAAATGGTCGAGGGG
TGGTATGTCACCAATGGATTAAGAGGAGTATCGAGTGCCTTGGGTAATATGGCCAAGGGGCAATGTGATGAGTCTATATGTTGTGAAAGTCATCGGGTGCCTTGGGTAAT
ATGGCCAAGGGGCGATGTACAGTTTGATCGTGAAGTCATCGGGTGCCTTGGGGGTCGGCGTGACTTGAAGGAGTCAGTCTCAGAGAGCTTTGTAAGGGCTATGAGAGAAG
CTACAAAAGGATCAACAAGGGTTGTTGATGAACCTGGTCCTTCAACAAGAGTTGTTGGAGAATCCAGTTCTTCTCGTCAATCTAGTCCTCCTCACGTAGTGGGAGAGCTT
CGACGCAGTGGGAGGATTGTAATACAACCTAAATGCTACTTGGGTTTAACTGAAACACAAGTAGTCATACCTGATGACGGCGTAGAAGATCCATTGTCTTATCATCAGGC
AATGAATGACATAGATAAACACGAGTGGGCCAAAGCCATGGACCTTGAGATGGAGTCTATGTACTTCAATCAAGTTTGGGAACTTGTAGATCCACCTGAAGGGGTCAAAC
CCATTGGGTATAAATTGATCTATAAGAGGAAAAGAGATGCTGCTGGGAAAGTACAAACTTTCAAAATACTTGTAGCAAAGGGTTATACCCAATGA

mRNA sequence

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Protein sequence

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MHSSAVRCPDLDGELIDVVDEHQITLTDKSGGPPSVHLLGLGLSAFSPCNPPSFFNFPATPSFTLSFAPPQPTSSLTFLLFCAHQELPALRRRLFPFPPRFRATSHLSFP
SFCAQPRPPRRTATAVRCRLVNELPDEDSARRERNRGLLCVFCPQLGARDFDKDPRQLHGSPILLARDLSSQPTATLVFPLFGKPLQPRNNKDLKLYDEVPVPRVKMVEG
WYVTNGLRGVSSALGNMAKGQCDESICCESHRVPWVIWPRGDVQFDREVIGCLGGRRDLKESVSESFVRAMREATKGSTRVVDEPGPSTRVVGESSSSRQSSPPHVVGEL
RRSGRIVIQPKCYLGLTETQVVIPDDGVEDPLSYHQAMNDIDKHEWAKAMDLEMESMYFNQVWELVDPPEGVKPIGYKLIYKRKRDAAGKVQTFKILVAKGYTQ

Lag0035722 (gene) of Sponge gourd (AG-4) v1 genome