; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035799 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035799
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr3:30471676..30472074
RNA-Seq ExpressionLag0035799
SyntenyLag0035799
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.9e-2156.82Show/hide
Query:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN
        R+ CQIC K GHGALDC+NR+N SYQGRHPPS+LAAM V +  S     +T + WL DSGCN H+T +  N  L+++YNGE+ +T+EN
Subjt:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN

KAB5534756.1 hypothetical protein DKX38_017842 [Salix brachista]7.8e-1955.29Show/hide
Query:  NRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIENG
        NR  CQICTK GH ALDC+NR N SYQGR PPS LAAM    + S T   W ADSG N H+T + TN   +  Y G++ IT+ NG
Subjt:  NRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIENG

KAB5572874.1 hypothetical protein DKX38_000068 [Salix brachista]7.8e-1955.29Show/hide
Query:  NRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIENG
        NR  CQIC+K GH ALDC+NR N SYQGR PPS LAAM    + S T   W ADSG N H+T + TN   +  Y GE+ IT+ NG
Subjt:  NRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIENG

TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.9e-2156.82Show/hide
Query:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN
        R+ CQIC K GHGALDC+NR+N SYQGRHPPS+LAAM V +  S     +T + WL DSGCN H+T +  N  L+++YNGE+ +T+EN
Subjt:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]2.7e-1950Show/hide
Query:  NQGRGNFSGNQGHSSGNFSSGATPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS------STTSTWLADSGCNTHVTPDATNF--
        NQGRG  SGN       F+S    NR  CQIC K GH ALDC+NR+N  +QGRHPP +LAAMV   + S      S+ +TWLADS CNTH+T D +N   
Subjt:  NQGRGNFSGNQGHSSGNFSSGATPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS------STTSTWLADSGCNTHVTPDATNF--

Query:  -ALNSSYNGEDAITIENG
         ++ S YNGE+ I++ +G
Subjt:  -ALNSSYNGEDAITIENG

TrEMBL top hitse value%identityAlignment
A0A2N9EZ90 Uncharacterized protein6.2e-2251.33Show/hide
Query:  QGRGNFS---GNQGHSSGNFSSGATPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSY
        Q   NFS    N   SS NFS+   PNR +CQIC KPGH ALDC+NR+N SYQGRHPP+KLAAM  A  PS +T+ W++D+G   H TPD  N   +S Y
Subjt:  QGRGNFS---GNQGHSSGNFSSGATPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSY

Query:  NGEDAITIENGHR
        N    +++ NG +
Subjt:  NGEDAITIENGHR

A0A2N9HW45 Uncharacterized protein1.2e-2045.97Show/hide
Query:  RGNFSGNQGHSSG-NFSSGA---------------TPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTP
        +GN  GNQG++SG N S+G                 PNR  CQIC K GH ALDC+NR+N SYQG HPP+KLAA+  A  PS +TS W++D+G   H TP
Subjt:  RGNFSGNQGHSSG-NFSSGA---------------TPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTP

Query:  DATNFALNSSYNGEDAITIENGHR
        D  N   +S YN    +++ NG +
Subjt:  DATNFALNSSYNGEDAITIENGHR

A0A2N9J2G3 Reverse transcriptase Ty1/copia-type domain-containing protein7.6e-2039.87Show/hide
Query:  NQGRGNFSG----------------NQGHSSG--------------------NFS------SGATPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSK
        N+GRGNF+G                NQGH+ G                    NFS      S   PNR  CQIC K GH ALDC+NR+N SYQGRH P+K
Subjt:  NQGRGNFSG----------------NQGHSSG--------------------NFS------SGATPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSK

Query:  LAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIENGHR
        LAA+  A+ PS +T+ W++D+G   H TPD  N   +S YN    +++ NG +
Subjt:  LAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIENGHR

A0A5A7U7J4 Putative mitochondrial protein2.4e-2156.82Show/hide
Query:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN
        R+ CQIC K GHGALDC+NR+N SYQGRHPPS+LAAM V +  S     +T + WL DSGCN H+T +  N  L+++YNGE+ +T+EN
Subjt:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN

A0A5D3C579 Putative mitochondrial protein2.4e-2156.82Show/hide
Query:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN
        R+ CQIC K GHGALDC+NR+N SYQGRHPPS+LAAM V +  S     +T + WL DSGCN H+T +  N  L+++YNGE+ +T+EN
Subjt:  RVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPS-----STTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAAGGTCGTGGAAATTTCTCTGGCAATCAAGGGCATAGCAGTGGCAATTTCTCCTCTGGTGCAACTCCGAATCGTGTTGTTTGCCAAATATGCACCAAGCCTGG
TCATGGGGCGCTAGATTGCTTCAATCGCCTGAATCTGTCCTATCAAGGGAGACATCCTCCCTCCAAACTTGCAGCCATGGTCGTTGCCAACGATCCCTCTTCTACAACAT
CTACTTGGCTTGCAGACAGCGGCTGCAATACTCACGTAACACCGGATGCCACAAATTTTGCCCTCAATTCAAGCTACAATGGGGAAGACGCAATTACTATAGAAAATGGA
CATAGAGACTACCTGTCACTCGGGCTGGTTTTGGTATTCTTTCAACTCCTCAAAGATCCTTTCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAAGGTCGTGGAAATTTCTCTGGCAATCAAGGGCATAGCAGTGGCAATTTCTCCTCTGGTGCAACTCCGAATCGTGTTGTTTGCCAAATATGCACCAAGCCTGG
TCATGGGGCGCTAGATTGCTTCAATCGCCTGAATCTGTCCTATCAAGGGAGACATCCTCCCTCCAAACTTGCAGCCATGGTCGTTGCCAACGATCCCTCTTCTACAACAT
CTACTTGGCTTGCAGACAGCGGCTGCAATACTCACGTAACACCGGATGCCACAAATTTTGCCCTCAATTCAAGCTACAATGGGGAAGACGCAATTACTATAGAAAATGGA
CATAGAGACTACCTGTCACTCGGGCTGGTTTTGGTATTCTTTCAACTCCTCAAAGATCCTTTCAACTGA
Protein sequenceShow/hide protein sequence
MNQGRGNFSGNQGHSSGNFSSGATPNRVVCQICTKPGHGALDCFNRLNLSYQGRHPPSKLAAMVVANDPSSTTSTWLADSGCNTHVTPDATNFALNSSYNGEDAITIENG
HRDYLSLGLVLVFFQLLKDPFN