; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0035802 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035802
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPol protein
Genome locationchr3:30600453..30607332
RNA-Seq ExpressionLag0035802
SyntenyLag0035802
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031844.1 pol protein [Cucumis melo var. makuwa]5.1e-1246.94Show/hide
Query:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE
        F ILE  GL++ +         L L P++STVHDVF+VSML K V DPSHV++ E L  +++L+YVE+ V++LA E + LR+K    V+VLW N + E
Subjt:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE

KAA0061989.1 pol protein [Cucumis melo var. makuwa]3.0e-1245Show/hide
Query:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTEGV
        F ILE  G M+ +         L LSP++STVHDVF+VSML K V DPSHV+N E L  +++L+Y E+ +++LA + ++LR++    V+VLW N + E V
Subjt:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTEGV

KAE8657890.1 Detected protein of unknown function [Hibiscus syriacus]2.3e-1238.33Show/hide
Query:  RIYINYSSCALVLNFGILEESGLMSKKAFSAKGLV--------ELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQ
        ++++  S    VL FG     G +S +      +V        +L L P M  +HDVF+VSML +   DPSH++NPE +    D+TY E+ ++ILA+E +
Subjt:  RIYINYSSCALVLNFGILEESGLMSKKAFSAKGLV--------ELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQ

Query:  VLRSKTFVFVEVLWLNRKTE
         LR+KT   V+VLW N K E
Subjt:  VLRSKTFVFVEVLWLNRKTE

TYJ97082.1 pol protein [Cucumis melo var. makuwa]3.9e-1230.94Show/hide
Query:  VGLFSDQDCRHEKLSWYAVNKAVPMVALVSSHGHARKDGSKRQVLLQVLYVPLNSSQE-LLRIYINYSSCALVLNFGILEESGLMSKKAFSAKGLVE---
        V + SD+D R     W  +  A+ M    S+  H + DG        +   P  +  +   R  + +   A +      E+ G +S +      + E   
Subjt:  VGLFSDQDCRHEKLSWYAVNKAVPMVALVSSHGHARKDGSKRQVLLQVLYVPLNSSQE-LLRIYINYSSCALVLNFGILEESGLMSKKAFSAKGLVE---

Query:  -----LVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE
             L L P+ STVHDVFYVSML K V D +HV++ E L  N++L+Y E+ ++ILA + ++LR++    V+VLW N   E
Subjt:  -----LVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE

XP_021601664.1 uncharacterized protein LOC110606926 [Manihot esculenta]3.0e-1231.91Show/hide
Query:  LNGV--GLFSDQDCRHEKLSWYAVNKAVPMVALVSSHGHARKDGSKRQVLLQVLYVPLNSSQELL------RIYINYSSCALVLNFG---ILEESGLMSK
        L+GV   + SD+D R     W  +++A+      S+  H + DG   +V+  +  +  N  ++ +      ++++  S    VL FG    L    +   
Subjt:  LNGV--GLFSDQDCRHEKLSWYAVNKAVPMVALVSSHGHARKDGSKRQVLLQVLYVPLNSSQELL------RIYINYSSCALVLNFG---ILEESGLMSK

Query:  KAFSAKGLV--ELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE
        +     GLV   L L P +  +H+VF+VSML +   DPS+V++ E +    DLTY E+ VKILA E + LR+K    V++LW N KTE
Subjt:  KAFSAKGLV--ELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE

TrEMBL top hitse value%identityAlignment
A0A5A7SKZ6 Pol protein2.5e-1246.94Show/hide
Query:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE
        F ILE  GL++ +         L L P++STVHDVF+VSML K V DPSHV++ E L  +++L+YVE+ V++LA E + LR+K    V+VLW N + E
Subjt:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTE

A0A5A7SS38 Pol protein3.2e-1229.28Show/hide
Query:  SSDSWIALLLFGFCEPSLKVFGLARNDALNGVGLFSDQDCRHEKLSWYAVNKAVPM-----------VALVSSHGHARKDGSKRQVLLQVLYVPLNSSQE
        S DS + L+ F +        G+A  +AL G        C    + W  V +   M           +  + SH H  + G K    ++   +       
Subjt:  SSDSWIALLLFGFCEPSLKVFGLARNDALNGVGLFSDQDCRHEKLSWYAVNKAVPM-----------VALVSSHGHARKDGSKRQVLLQVLYVPLNSSQE

Query:  LLRIYINYSSCALVLNFGILEESGLMSKKAFSAKGLVE--------LVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANE
          ++++  +    VL F   E  G +S +      ++E        L L P++STVHDVF+VSML K V DPSHV++ E L  +++L+Y E+ V++LA E
Subjt:  LLRIYINYSSCALVLNFGILEESGLMSKKAFSAKGLVE--------LVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANE

Query:  AQVLRSKTFVFVEVLWLNRKTE
         + LR+K    V+VLW N + E
Subjt:  AQVLRSKTFVFVEVLWLNRKTE

A0A5A7SWD4 Reverse transcriptase3.2e-1229.28Show/hide
Query:  SSDSWIALLLFGFCEPSLKVFGLARNDALNGVGLFSDQDCRHEKLSWYAVNKAVPM-----------VALVSSHGHARKDGSKRQVLLQVLYVPLNSSQE
        S DS + L+ F +        G+A  +AL G        C    + W  V +   M           +  + SH H  +   K    ++   +       
Subjt:  SSDSWIALLLFGFCEPSLKVFGLARNDALNGVGLFSDQDCRHEKLSWYAVNKAVPM-----------VALVSSHGHARKDGSKRQVLLQVLYVPLNSSQE

Query:  LLRIYINYSSCALVLNFGILEESGLMSKKAFSAKGLVE--------LVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANE
          ++++  +    VL F   E  G +S +      +VE        L L P++STVHDVF+VSML K V DPSHV++ E L  +++L+Y E+ V++LA E
Subjt:  LLRIYINYSSCALVLNFGILEESGLMSKKAFSAKGLVE--------LVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANE

Query:  AQVLRSKTFVFVEVLWLNRKTE
         ++LR+K    V+VLW N + E
Subjt:  AQVLRSKTFVFVEVLWLNRKTE

A0A5A7V8H2 Pol protein1.5e-1245Show/hide
Query:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTEGV
        F ILE  G M+ +         L LSP++STVHDVF+VSML K V DPSHV+N E L  +++L+Y E+ +++LA + ++LR++    V+VLW N + E V
Subjt:  FGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQVLRSKTFVFVEVLWLNRKTEGV

A0A6A2WT25 Reverse transcriptase1.1e-1238.33Show/hide
Query:  RIYINYSSCALVLNFGILEESGLMSKKAFSAKGLV--------ELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQ
        ++++  S    VL FG     G +S +      +V        +L L P M  +HDVF+VSML +   DPSH++NPE +    D+TY E+ ++ILA+E +
Subjt:  RIYINYSSCALVLNFGILEESGLMSKKAFSAKGLV--------ELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTVKILANEAQ

Query:  VLRSKTFVFVEVLWLNRKTE
         LR+KT   V+VLW N K E
Subjt:  VLRSKTFVFVEVLWLNRKTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGATGATTCTGATGAAGAAGATAGCTCTTAAAGGTGGGGAGTCAGTGCACCTCTCGTTTAAGGTCAAGGGATTGTCATTCCAAGGTTGCCTAAAAAGCCAAGT
ATACGCGTTGCAAGTTTCTGTTATGTCTTCAGACTCATGGATAGCCTTGCTGCTGTTTGGATTTTGTGAACCAAGTCTCAAGGTTTTTGGACTTGCTCGTAACGATGCTC
TTAATGGTGTTGGTTTATTCTCAGACCAAGATTGTCGTCACGAAAAGTTGTCGTGGTATGCAGTTAATAAGGCAGTGCCAATGGTGGCCTTAGTGTCATCTCATGGCCAT
GCTAGGAAGGATGGTTCGAAAAGGCAAGTTCTACTACAAGTGTTGTATGTTCCACTCAACTCGTCTCAAGAGTTGTTGAGGATATACATCAACTATTCCTCTTGTGCCTT
AGTTTTAAACTTTGGGATTCTAGAGGAAAGTGGTTTGATGAGCAAAAAAGCCTTTAGTGCTAAGGGCCTTGTGGAGTTGGTGTTATCACCGACCATGTCGACTGTGCATG
ATGTGTTCTATGTGTCCATGTTGTGGAAATGCGTGTGTGATCCTTCGCATGTGTTGAATCCTGAACATCTGTCGCAGAATAAGGACTTGACATATGTGGAGAAGACTGTC
AAGATCCTAGCCAATGAAGCACAGGTTCTAAGAAGCAAGACTTTTGTTTTTGTGGAAGTGTTATGGTTGAACCGTAAAACCGAAGGTGTTTTTGGGAAAGTAGTTGGAAT
TGTTCGAGCGGTAGTCTTTCGAGGACGAAAGCTTTTAAGACTCCCACAATTCGTTCTTGGCCGGGAGGATAGTAGGGAAGACTCTAGAGGTTGTCCAGAGTTGATTCGAG
AAGGAAAACGTCACAAGGAGATCCATCCATTTGAGCTACAAAAGCGTCGAGACGCCAAGGCGCAGCGTCGAGACGCTGGGACATTCTTCTTCGGCTCGAATTCACGCCGT
CGTCGAGACGCCAAGACCGATGTCCCGACGCCGTCTTCACACAATTGGGTCTTTTCACCTCCTCGCCGTCCAAGACACCGAGATGGCTCCAAAACTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATGATGATTCTGATGAAGAAGATAGCTCTTAAAGGTGGGGAGTCAGTGCACCTCTCGTTTAAGGTCAAGGGATTGTCATTCCAAGGTTGCCTAAAAAGCCAAGT
ATACGCGTTGCAAGTTTCTGTTATGTCTTCAGACTCATGGATAGCCTTGCTGCTGTTTGGATTTTGTGAACCAAGTCTCAAGGTTTTTGGACTTGCTCGTAACGATGCTC
TTAATGGTGTTGGTTTATTCTCAGACCAAGATTGTCGTCACGAAAAGTTGTCGTGGTATGCAGTTAATAAGGCAGTGCCAATGGTGGCCTTAGTGTCATCTCATGGCCAT
GCTAGGAAGGATGGTTCGAAAAGGCAAGTTCTACTACAAGTGTTGTATGTTCCACTCAACTCGTCTCAAGAGTTGTTGAGGATATACATCAACTATTCCTCTTGTGCCTT
AGTTTTAAACTTTGGGATTCTAGAGGAAAGTGGTTTGATGAGCAAAAAAGCCTTTAGTGCTAAGGGCCTTGTGGAGTTGGTGTTATCACCGACCATGTCGACTGTGCATG
ATGTGTTCTATGTGTCCATGTTGTGGAAATGCGTGTGTGATCCTTCGCATGTGTTGAATCCTGAACATCTGTCGCAGAATAAGGACTTGACATATGTGGAGAAGACTGTC
AAGATCCTAGCCAATGAAGCACAGGTTCTAAGAAGCAAGACTTTTGTTTTTGTGGAAGTGTTATGGTTGAACCGTAAAACCGAAGGTGTTTTTGGGAAAGTAGTTGGAAT
TGTTCGAGCGGTAGTCTTTCGAGGACGAAAGCTTTTAAGACTCCCACAATTCGTTCTTGGCCGGGAGGATAGTAGGGAAGACTCTAGAGGTTGTCCAGAGTTGATTCGAG
AAGGAAAACGTCACAAGGAGATCCATCCATTTGAGCTACAAAAGCGTCGAGACGCCAAGGCGCAGCGTCGAGACGCTGGGACATTCTTCTTCGGCTCGAATTCACGCCGT
CGTCGAGACGCCAAGACCGATGTCCCGACGCCGTCTTCACACAATTGGGTCTTTTCACCTCCTCGCCGTCCAAGACACCGAGATGGCTCCAAAACTCCTTAA
Protein sequenceShow/hide protein sequence
MMMMILMKKIALKGGESVHLSFKVKGLSFQGCLKSQVYALQVSVMSSDSWIALLLFGFCEPSLKVFGLARNDALNGVGLFSDQDCRHEKLSWYAVNKAVPMVALVSSHGH
ARKDGSKRQVLLQVLYVPLNSSQELLRIYINYSSCALVLNFGILEESGLMSKKAFSAKGLVELVLSPTMSTVHDVFYVSMLWKCVCDPSHVLNPEHLSQNKDLTYVEKTV
KILANEAQVLRSKTFVFVEVLWLNRKTEGVFGKVVGIVRAVVFRGRKLLRLPQFVLGREDSREDSRGCPELIREGKRHKEIHPFELQKRRDAKAQRRDAGTFFFGSNSRR
RRDAKTDVPTPSSHNWVFSPPRRPRHRDGSKTP