CuGenDBv2

Gene ID	Lag0035832
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	tetratricopeptide repeat domain-containing protein PYG7, chloroplastic
Genome location	chr3:31739229..31739983
RNA-Seq Expression	Lag0035832
Synteny	Lag0035832
Gene Ontology terms	GO:0048564 - photosystem I assembly (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR013105 - Tetratricopeptide repeat 2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004150400.1 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X1 [Cucumis sativus]

5.0e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

XP_008461469.1 PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis melo]

5.0e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

XP_008461470.1 PREDICTED: uncharacterized protein ycf37 isoform X2 [Cucumis melo]

5.0e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

XP_011659092.1 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X2 [Cucumis sativus]

5.0e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

XP_022158242.1 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic [Momordica charantia]

1.3e-18

73.33

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK ITQFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4L3 TPR_REGION domain-containing protein

2.4e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

A0A1S3CEI5 uncharacterized protein ycf37 isoform X1

2.4e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

A0A1S3CET8 uncharacterized protein ycf37 isoform X2

2.4e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

A0A5A7UZ94 Tetratricopeptide-like helical

2.4e-18

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

A0A6J1DWQ6 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic

6.3e-19

73.33

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK ITQFETAVKL   YVTAWNNLGD YE KKEYKSALK FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

SwissProt top hits

e value

%identity

Alignment

B9DHG0 Tetratricopeptide repeat domain-containing protein PYG7, chloroplastic

2.0e-17

65.33

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFE AVKL   YVTAWNNLGD YE KKE   AL  FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

C0PEY7 Tetratricopeptide repeat domain-containing protein PYG7, chloroplastic

1.7e-16

70.49

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Query:  KVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        +VYNALGVSY R +KLDK I QF+ AV+L   YVTAWNNLGD YE +K+ KSALK FEEVL
Subjt:  KVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

Arabidopsis top hits

e value

%identity

Alignment

AT1G22700.1 Tetratricopeptide repeat (TPR)-like superfamily protein

1.4e-18

65.33

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFE AVKL   YVTAWNNLGD YE KKE   AL  FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

AT1G22700.2 Tetratricopeptide repeat (TPR)-like superfamily protein

1.4e-18

65.33

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFE AVKL   YVTAWNNLGD YE KKE   AL  FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

AT1G22700.3 Tetratricopeptide repeat (TPR)-like superfamily protein

1.4e-18

65.33

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Query:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL
        QA   ++G+     +VYNALGVSYVR DKLDK I QFE AVKL   YVTAWNNLGD YE KKE   AL  FEEVL
Subjt:  QAASSFNGN----MKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVL

Sequences

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CDS sequence

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ATGGCAAGCCAAGCTGCTAGTTCTTTCAATGGCAACATGAAGGTTTACAATGCGCTTGGAGTTAGTTATGTGCGTGCCGATAAGCTTGACAAGAGAATTACCCAGTTCGA
AACTGCCGTGAAGCTGCACCTTTGGTATGTTACAGCTTGGAACAATCTTGGAGATGTATATGAGATAAAGAAAGAATACAAGTCAGCTCTTAAAGATTTTGAAGAAGTTC
TTTTTATCTGA

mRNA sequence

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Protein sequence

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MASQAASSFNGNMKVYNALGVSYVRADKLDKRITQFETAVKLHLWYVTAWNNLGDVYEIKKEYKSALKDFEEVLFI

Lag0035832 (gene) of Sponge gourd (AG-4) v1 genome