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Lag0035846 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035846
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr3:32168284..32168595
RNA-Seq ExpressionLag0035846
SyntenyLag0035846
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]1.3e-2149.09Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT-----------PKR
        +Y YL C D+LKV+GAVFML  +A  WW  +   ++  +EP+ W+  KDLLYDYYFP+T+KD+KE EFLH TQ  ++V QYE+KFT            + 
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT-----------PKR

Query:  KIIKRFIRSL
        + IKRF+R L
Subjt:  KIIKRFIRSL

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]3.4e-2249.12Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------
        +Y YL CED+ KV+GAVFML  +A  WW S+ A++++ + P+ W+ FK+LLYDYY+PETVKD KE EFLH  Q  + V QYERKFT   +          
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------

Query:  --IKRFIRSLKEEI
          IKRF++ L++ I
Subjt:  --IKRFIRSLKEEI

XP_022156330.1 uncharacterized protein LOC111023250 [Momordica charantia]5.3e-2350.88Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------
        +Y YL CED+ KV+GAVFML  +A  WW S+ A+++  + P+ W+ FKDLLYDYY+PETVKD KE EFLHF+Q  + V QYERKFT   +          
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------

Query:  --IKRFIRSLKEEI
          IKRF++ L++ I
Subjt:  --IKRFIRSLKEEI

XP_022158637.1 uncharacterized protein LOC111025088 [Momordica charantia]1.3e-2150Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT----------PKRK
        +Y YL CED+ KV+G VFML  +A  WW S+  +++  + P+ W+ FKDLLYDYY+PETVKD KE EFLH  Q  + V QYERKFT          P   
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT----------PKRK

Query:  I-IKRFIRSLKEEI
        I IKRF++ L++ I
Subjt:  I-IKRFIRSLKEEI

XP_022158645.1 uncharacterized protein LOC111025102 [Momordica charantia]2.5e-2047.37Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT----------PKRK
        +Y YL C D  KVRGAVFMLW +A  WW+S+ A+++  + P+ W+ FKDLLY+YYFP TV+++K  EFL  TQ ++ V Q+ERKFT          P  +
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT----------PKRK

Query:  I-IKRFIRSLKEEI
        + I +FI  L+ EI
Subjt:  I-IKRFIRSLKEEI

TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196036.3e-2249.09Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT-----------PKR
        +Y YL C D+LKV+GAVFML  +A  WW  +   ++  +EP+ W+  KDLLYDYYFP+T+KD+KE EFLH TQ  ++V QYE+KFT            + 
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT-----------PKR

Query:  KIIKRFIRSL
        + IKRF+R L
Subjt:  KIIKRFIRSL

A0A6J1DQ01 uncharacterized protein LOC1110232502.6e-2350.88Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------
        +Y YL CED+ KV+GAVFML  +A  WW S+ A+++  + P+ W+ FKDLLYDYY+PETVKD KE EFLHF+Q  + V QYERKFT   +          
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------

Query:  --IKRFIRSLKEEI
          IKRF++ L++ I
Subjt:  --IKRFIRSLKEEI

A0A6J1DUM2 uncharacterized protein LOC1110232471.7e-2249.12Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------
        +Y YL CED+ KV+GAVFML  +A  WW S+ A++++ + P+ W+ FK+LLYDYY+PETVKD KE EFLH  Q  + V QYERKFT   +          
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKI---------

Query:  --IKRFIRSLKEEI
          IKRF++ L++ I
Subjt:  --IKRFIRSLKEEI

A0A6J1DXQ7 uncharacterized protein LOC1110250886.3e-2250Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT----------PKRK
        +Y YL CED+ KV+G VFML  +A  WW S+  +++  + P+ W+ FKDLLYDYY+PETVKD KE EFLH  Q  + V QYERKFT          P   
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT----------PKRK

Query:  I-IKRFIRSLKEEI
        I IKRF++ L++ I
Subjt:  I-IKRFIRSLKEEI

A0A6J1E0B4 uncharacterized protein LOC1110252131.2e-2056.98Show/hide
Query:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT
        +Y YL CED+ KV+GAVFML  +A  WW S+ A+++  + P+ W+ FK+LLYDYY+PE VKD KE EFLH  Q  + V QYERKFT
Subjt:  MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAACTACTTGGATTGTGAAGATCGTTTGAAGGTGAGAGGAGCAGTCTTCATGCTCTGGGATAAAGCTCGGATGTGGTGGAAATCTATGAAAGCCTCTAAAGAGTT
TGAAGATGAGCCATTGGCTTGGTCAGAGTTCAAGGATCTCCTGTACGATTATTACTTTCCAGAAACTGTCAAGGATGACAAGGAAACCGAATTTCTGCACTTCACACAAG
ACAACATGTTAGTGGTCCAATATGAGAGGAAGTTCACTCCTAAGCGGAAGATTATTAAAAGGTTTATCAGAAGCCTGAAGGAGGAGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACAACTACTTGGATTGTGAAGATCGTTTGAAGGTGAGAGGAGCAGTCTTCATGCTCTGGGATAAAGCTCGGATGTGGTGGAAATCTATGAAAGCCTCTAAAGAGTT
TGAAGATGAGCCATTGGCTTGGTCAGAGTTCAAGGATCTCCTGTACGATTATTACTTTCCAGAAACTGTCAAGGATGACAAGGAAACCGAATTTCTGCACTTCACACAAG
ACAACATGTTAGTGGTCCAATATGAGAGGAAGTTCACTCCTAAGCGGAAGATTATTAAAAGGTTTATCAGAAGCCTGAAGGAGGAGATTTGA
Protein sequenceShow/hide protein sequence
MYNYLDCEDRLKVRGAVFMLWDKARMWWKSMKASKEFEDEPLAWSEFKDLLYDYYFPETVKDDKETEFLHFTQDNMLVVQYERKFTPKRKIIKRFIRSLKEEI