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Lag0035852 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035852
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:32189304..32189996
RNA-Seq ExpressionLag0035852
SyntenyLag0035852
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023899473.1 uncharacterized protein LOC112011331 [Quercus suber]2.6e-1241.35Show/hide
Query:  LPNLGGP--VRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLV
        L +LG P    P  + W  P   W K+N DAA    S   G+GVVVR  EG + AA+ K +P  LGPLEAEA+A+ E +  A+ +G+  ++ ETD + + 
Subjt:  LPNLGGP--VRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLV

Query:  DMFH
        D  H
Subjt:  DMFH

XP_023900624.1 uncharacterized protein LOC112012477, partial [Quercus suber]1.4e-1350Show/hide
Query:  SGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLV
        S W  P  GW K+N+D A  ++    GVGVV+R  EGCL  AM K LP  LGPLE EA AI EG+ LA  LG+S+++VE D   ++
Subjt:  SGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLV

XP_023914149.1 uncharacterized protein LOC112025707 [Quercus suber]9.1e-1349.38Show/hide
Query:  SGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETD
        S W+    GW K+NVD    +++   GVGVVVR  +GCL  AM K +P  LGPLEAEARA  EG+ LA+ LG++ +++E D
Subjt:  SGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETD

XP_030942013.1 uncharacterized protein LOC115967068 [Quercus lobata]1.3e-1145.74Show/hide
Query:  PVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG
        P I GW  P  GW K+NVD A  ++    G+GVV+R   G L  AM K L   LG LE EA+A  EG+QLA  LG+  IV+E D   + D   G
Subjt:  PVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG

XP_030947188.1 uncharacterized protein LOC115971413 [Quercus lobata]1.5e-1238.41Show/hide
Query:  NLIRHGIDAEPFCKACSSQYETTDHVLDRSCGALPNLGGPVRPVI--SGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGP
        N +RHG  A   CK+ + +  T          ALP+ G P R  I    W  P  GW K+NVDAA  ++    G+GVV+R  +G +  AM K L   LG 
Subjt:  NLIRHGIDAEPFCKACSSQYETTDHVLDRSCGALPNLGGPVRPVI--SGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGP

Query:  LEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG
        LEA+A+A+  G+ LA  LG+  IVVE D   ++   +G
Subjt:  LEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG

TrEMBL top hitse value%identityAlignment
A0A120GUT1 Uncharacterized protein2.0e-1031.39Show/hide
Query:  SNLIRHGIDAEPFCKACSSQYETTDHVL------DRSCGALPNLGGPVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLP
        + L R  +  E  C+ C S+ ++  HV        R    +    GP  P  + W++PS GW K+N DA   R+S+    GVV+R   G +     + + 
Subjt:  SNLIRHGIDAEPFCKACSSQYETTDHVL------DRSCGALPNLGGPVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLP

Query:  ASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKL
             L AEA A  EGL+L   LG+ ++++E DC +L
Subjt:  ASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKL

A0A1R3IZZ8 RNase H domain-containing protein1.2e-1043.37Show/hide
Query:  WQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKL
        WQ+P  GW K+N D A    S V G+G+VVR SEG +  + GK + A    L AEA A+ E +Q+ + +G+ Q+++ETDCS +
Subjt:  WQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKL

A0A3L6QL88 RNase H domain-containing protein2.0e-1039.06Show/hide
Query:  PFCKACSSQYETTDHVLDRSCGALPNLGGPVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGL
        P CKA     ETT+ +     G         R V   WQRP  G +KLNVDAA   +      G + R SEG   AA G  LP+    L AEA+A   GL
Subjt:  PFCKACSSQYETTDHVLDRSCGALPNLGGPVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGL

Query:  QLAQRLGMSQIVVETDCSKLVDMFHGRV
        Q  QR   +Q++ ETD  +LVD++  R+
Subjt:  QLAQRLGMSQIVVETDCSKLVDMFHGRV

A0A7N2N0U9 RNase H domain-containing protein1.8e-1143.3Show/hide
Query:  VRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHGR
        V P   GW   S GW K+NVD A  R+SS  G+GVV+R  +G +  AM K L   LG +E EA+A  EGL LA  LG+ Q+++E D   + +   G+
Subjt:  VRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHGR

A0A7N2R0C3 Reverse transcriptase domain-containing protein3.1e-1139.8Show/hide
Query:  PVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHGR
        PV   I  W+ P  GW K NVD A  ++++  G+GVV+R  +G +  AM K L   LG +E EA+A  EGL+LA  LG+ Q+++E D   + +   G+
Subjt:  PVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein1.6e-0431.87Show/hide
Query:  VRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEG-CLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKL
        +   +S    PSC  VK N DA+      V+G+G ++R S+G  L   MGK     + P EAE  A++  +Q     G ++++ E D S +
Subjt:  VRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEG-CLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKL

AT2G33160.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein3.3e-0530.3Show/hide
Query:  GGPVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG
        G  +R  I  W+RP+ GWVK NVD +    +     G +VR   G    A   +       LE E +A+L  +Q     G  +I  E D  ++ D+ +G
Subjt:  GGPVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG

AT3G09510.1 Ribonuclease H-like superfamily protein3.0e-0631.46Show/hide
Query:  WQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG
        W+ P   +VK N DA    Q      G ++R   G   +     L  +  PLEAE +A+L  LQ     G +Q+ +E DC  L+++ +G
Subjt:  WQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILEGLQLAQRLGMSQIVVETDCSKLVDMFHG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAATCTGATTCGCCATGGAATTGATGCAGAGCCTTTTTGTAAAGCATGTTCCTCTCAGTACGAAACAACAGATCATGTGTTGGATCGGTCGTGTGGTGCATTGCC
AAACTTGGGCGGTCCAGTGCGGCCTGTGATTTCCGGTTGGCAGCGACCTTCGTGCGGTTGGGTTAAATTGAATGTTGATGCTGCTTGTCCTCGACAAAGTAGCGTTACTG
GCGTGGGGGTTGTTGTTCGTACTTCTGAAGGGTGCCTCCATGCGGCTATGGGGAAGTTGCTTCCTGCTTCTCTTGGCCCATTGGAAGCAGAGGCTCGAGCGATACTTGAG
GGACTGCAATTAGCTCAAAGGTTGGGGATGTCTCAAATTGTTGTGGAAACAGATTGTAGTAAGCTTGTGGATATGTTCCATGGGCGGGTTGTTTCACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTAATCTGATTCGCCATGGAATTGATGCAGAGCCTTTTTGTAAAGCATGTTCCTCTCAGTACGAAACAACAGATCATGTGTTGGATCGGTCGTGTGGTGCATTGCC
AAACTTGGGCGGTCCAGTGCGGCCTGTGATTTCCGGTTGGCAGCGACCTTCGTGCGGTTGGGTTAAATTGAATGTTGATGCTGCTTGTCCTCGACAAAGTAGCGTTACTG
GCGTGGGGGTTGTTGTTCGTACTTCTGAAGGGTGCCTCCATGCGGCTATGGGGAAGTTGCTTCCTGCTTCTCTTGGCCCATTGGAAGCAGAGGCTCGAGCGATACTTGAG
GGACTGCAATTAGCTCAAAGGTTGGGGATGTCTCAAATTGTTGTGGAAACAGATTGTAGTAAGCTTGTGGATATGTTCCATGGGCGGGTTGTTTCACTCTAG
Protein sequenceShow/hide protein sequence
MSNLIRHGIDAEPFCKACSSQYETTDHVLDRSCGALPNLGGPVRPVISGWQRPSCGWVKLNVDAACPRQSSVTGVGVVVRTSEGCLHAAMGKLLPASLGPLEAEARAILE
GLQLAQRLGMSQIVVETDCSKLVDMFHGRVVSL