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Lag0035989 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0035989
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:36056434..36056853
RNA-Seq ExpressionLag0035989
SyntenyLag0035989
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8667347.1 hypothetical protein F3Y22_tig00112411pilonHSYRG00033 [Hibiscus syriacus]4.7e-0630Show/hide
Query:  DGLDLFCIGSWAFWNDQNSMIHNRPIPP--IDVRCALISIKRGQHV--------DEVRS------LVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGG
        +G DLF    W  WN +N ++HN  +      V C+   ++  + V        DEVR       +  G++E+ ++VD       R+ S+GVV RDS+G 
Subjt:  DGLDLFCIGSWAFWNDQNSMIHNRPIPP--IDVRCALISIKRGQHV--------DEVRS------LVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGG

Query:  LIAALHSLLPSYVNPQCAEASTILEGLRLA
        +IA L  ++    + + AE +   EG++LA
Subjt:  LIAALHSLLPSYVNPQCAEASTILEGLRLA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.0e-0829.33Show/hide
Query:  QDRMDIKDRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHNRPIPPIDVRCALISIKRGQH------------VDEVRSLVQ-----GKDEMSIHVDAR
        +D +   + WS   +      L+L  I  W  WND+NS+IH + + P++ +C  ++     H                R +VQ         + ++ DA 
Subjt:  QDRMDIKDRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHNRPIPPIDVRCALISIKRGQH------------VDEVRSLVQ-----GKDEMSIHVDAR

Query:  CDIARRRTSVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLA
        C  A   TS G +IRDS   L+AA    +P  ++P  AE   ILEGL+ A
Subjt:  CDIARRRTSVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLA

XP_023878301.1 uncharacterized protein LOC111990748 [Quercus suber]1.0e-0530.4Show/hide
Query:  LDLFCIGSWAFWNDQNSMIHN-RPIPPIDV------------RCALISIKRGQHVDEVRSLVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGGLIAAL
        L+LF + SWA W ++N ++HN  P+ P  V            + A + I   +H  ++R          ++VD       R +S+GV+IRDS G ++AAL
Subjt:  LDLFCIGSWAFWNDQNSMIHN-RPIPPIDV------------RCALISIKRGQHVDEVRSLVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGGLIAAL

Query:  HSLLPSYVNPQCAEASTILEGLRLA
        +  LP        EA  + +G+ LA
Subjt:  HSLLPSYVNPQCAEASTILEGLRLA

XP_023893347.1 uncharacterized protein LOC112005329 [Quercus suber]1.0e-0533.87Show/hide
Query:  LDLFCIGSWAFWNDQNSMIHN-RPIPPIDV----RCALISIK--RGQHVDEV--RSLVQGKDEMSIH---VDARCDIARRRTSVGVVIRDSKGGLIAALH
        LDLF + +W+ W ++N   HN   IPP  V    R AL      R  H+  +   SL+        H   VD   D     + +GV+IRDS G +I AL 
Subjt:  LDLFCIGSWAFWNDQNSMIHN-RPIPPIDV----RCALISIK--RGQHVDEV--RSLVQGKDEMSIH---VDARCDIARRRTSVGVVIRDSKGGLIAALH

Query:  SLLPSYVNPQCAEASTILEGLRLA
         +LP  +N +  EA  +L G+  A
Subjt:  SLLPSYVNPQCAEASTILEGLRLA

XP_030949373.1 uncharacterized protein LOC115973258 [Quercus lobata]4.7e-0624.83Show/hide
Query:  MIQDRMDIKDRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHN-RPIPPI-----------DVRCALISIKRGQHVDEVRSLVQGKDEMSIHVDARCDI
        ++ + +D  D    +C  P  + LD F   +WA W+++N ++HN + + P+           D+  A   +   ++   V  L        ++VD    +
Subjt:  MIQDRMDIKDRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHN-RPIPPI-----------DVRCALISIKRGQHVDEVRSLVQGKDEMSIHVDARCDI

Query:  ARRRT-SVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLAE
            T SVG ++R+S G ++AAL   LPS    +  E   + +G+ LA+
Subjt:  ARRRT-SVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLAE

TrEMBL top hitse value%identityAlignment
A0A0E0CHR8 Uncharacterized protein1.3e-0634.43Show/hide
Query:  DLFCIGSWAFWNDQNSMIHNRPI--PP--------IDVRCALISIKRGQHVDEVRSLVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGGLIAALHSLL
        D+   G W  W  +   +H   I  PP        I     L+S K  +     R   +G   + I+VDA  D  +   S G VIRDS GG IAA HS +
Subjt:  DLFCIGSWAFWNDQNSMIHNRPI--PP--------IDVRCALISIKRGQHVDEVRSLVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGGLIAALHSLL

Query:  PSYVNPQCAEASTILEGLRLAE
        P  V+   AEA+ + +GL LA+
Subjt:  PSYVNPQCAEASTILEGLRLAE

A0A6A2Y841 Beta-galactosidase2.3e-0630Show/hide
Query:  DGLDLFCIGSWAFWNDQNSMIHNRPIPP--IDVRCALISIKRGQHV--------DEVRS------LVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGG
        +G DLF    W  WN +N ++HN  +      V C+   ++  + V        DEVR       +  G++E+ ++VD       R+ S+GVV RDS+G 
Subjt:  DGLDLFCIGSWAFWNDQNSMIHNRPIPP--IDVRCALISIKRGQHV--------DEVRS------LVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGG

Query:  LIAALHSLLPSYVNPQCAEASTILEGLRLA
        +IA L  ++    + + AE +   EG++LA
Subjt:  LIAALHSLLPSYVNPQCAEASTILEGLRLA

A0A6J1CK80 uncharacterized protein LOC1110120471.1e-0530.77Show/hide
Query:  DRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHNRPIPPIDVRC--------ALISIKRGQHVDEVRSLV--------QGKDEMSIHVDARCDIARRRT
        DRW+ W +   ++ L L  I  WA WND+N    N  I   DV          A+  + R +  +E +  +          K  + ++VDA  D+  +R 
Subjt:  DRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHNRPIPPIDVRC--------ALISIKRGQHVDEVRSLV--------QGKDEMSIHVDARCDIARRRT

Query:  SVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLAE
         VGV++RD +  ++AAL S   +  +P  AE   I E +RLAE
Subjt:  SVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLAE

A0A6J1DX30 uncharacterized protein LOC1110248744.9e-0929.33Show/hide
Query:  QDRMDIKDRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHNRPIPPIDVRCALISIKRGQH------------VDEVRSLVQ-----GKDEMSIHVDAR
        +D +   + WS   +      L+L  I  W  WND+NS+IH + + P++ +C  ++     H                R +VQ         + ++ DA 
Subjt:  QDRMDIKDRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHNRPIPPIDVRCALISIKRGQH------------VDEVRSLVQ-----GKDEMSIHVDAR

Query:  CDIARRRTSVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLA
        C  A   TS G +IRDS   L+AA    +P  ++P  AE   ILEGL+ A
Subjt:  CDIARRRTSVGVVIRDSKGGLIAALHSLLPSYVNPQCAEASTILEGLRLA

A0A803NGI9 Uncharacterized protein3.9e-0628.33Show/hide
Query:  WAFWNDQNSMIHNRP-IPPIDVRCALISI-----KRGQHVDEVRS----------LVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGGLIAALHSLLP
        W  WND+N+ IH +P + P  +    ++      ++      +R           +    D++ ++VDA CDI+R +  VG++IR+S G ++AA    L 
Subjt:  WAFWNDQNSMIHNRP-IPPIDVRCALISI-----KRGQHVDEVRS----------LVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGGLIAALHSLLP

Query:  SYVNPQCAEASTILEGLRLA
          + PQ  EA  +L G+  A
Subjt:  SYVNPQCAEASTILEGLRLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCCTATGATTCAAGATCGAATGGATATTAAGGATCGGTGGAGTGAATGGTGTAAACCACCATTTGTCGATGGTCTTGACCTCTTTTGTATTGGATCCTGGGCCTT
TTGGAATGATCAAAACTCCATGATCCATAATAGACCCATTCCACCGATTGATGTTCGATGTGCCTTGATCTCTATTAAGCGAGGCCAACATGTGGATGAGGTTCGTTCCC
TTGTTCAGGGGAAGGATGAAATGAGCATTCATGTGGACGCGAGATGTGATATAGCTAGGCGGCGCACTAGTGTTGGTGTCGTTATTCGAGATTCAAAAGGTGGTTTGATT
GCAGCATTACATAGTCTATTACCATCTTATGTTAATCCCCAATGCGCGGAGGCGTCAACGATTTTAGAAGGTCTTCGCCTGGCTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCCTATGATTCAAGATCGAATGGATATTAAGGATCGGTGGAGTGAATGGTGTAAACCACCATTTGTCGATGGTCTTGACCTCTTTTGTATTGGATCCTGGGCCTT
TTGGAATGATCAAAACTCCATGATCCATAATAGACCCATTCCACCGATTGATGTTCGATGTGCCTTGATCTCTATTAAGCGAGGCCAACATGTGGATGAGGTTCGTTCCC
TTGTTCAGGGGAAGGATGAAATGAGCATTCATGTGGACGCGAGATGTGATATAGCTAGGCGGCGCACTAGTGTTGGTGTCGTTATTCGAGATTCAAAAGGTGGTTTGATT
GCAGCATTACATAGTCTATTACCATCTTATGTTAATCCCCAATGCGCGGAGGCGTCAACGATTTTAGAAGGTCTTCGCCTGGCTGAGTGA
Protein sequenceShow/hide protein sequence
MQPMIQDRMDIKDRWSEWCKPPFVDGLDLFCIGSWAFWNDQNSMIHNRPIPPIDVRCALISIKRGQHVDEVRSLVQGKDEMSIHVDARCDIARRRTSVGVVIRDSKGGLI
AALHSLLPSYVNPQCAEASTILEGLRLAE