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Lag0036061 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036061
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr3:38180005..38180951
RNA-Seq ExpressionLag0036061
SyntenyLag0036061
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PIN03645.1 hypothetical protein CDL12_23824 [Handroanthus impetiginosus]1.2e-0933.33Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQW--------HKFMGQEEATLLR-EILPI-----------------DQLLTQYFYEGLLSMERSMT
        VTDEQI LRAFPFS  D+ +  + L   P   V+ W         KF     AT +R EI  +                 +QLL QYFYEGLL MER M 
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQW--------HKFMGQEEATLLR-EILPI-----------------DQLLTQYFYEGLLSMERSMT

Query:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD
        D A GGA+VNK  +E R LIS                                             +Q VKACG+C+  GH     P  + D
Subjt:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD

PIN20442.1 hypothetical protein CDL12_06873 [Handroanthus impetiginosus]1.2e-0932.29Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFPVQQWHKFMGQEEATLLR-EILPI----------------------------DQLLTQYFYEGLLSMERSMT
        VTDEQI LRAFPFS  D+ +    L   P+    KF     AT +R EI  +                            +QLL QYFYEGLL MER M 
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFPVQQWHKFMGQEEATLLR-EILPI----------------------------DQLLTQYFYEGLLSMERSMT

Query:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD
        D A GGA+VNK  +E R LIS                                             +Q VKACG+C+  GH     P  + D
Subjt:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD

XP_024963453.1 uncharacterized protein LOC112503699, partial [Cynara cardunculus var. scolymus]1.4e-1033.73Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY
        V+++ + L+AFPFS +D  R ++ L   P   V  W++         F     A L REI  I                            DQLL QYFY
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY

Query:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN--------VKACGVCSIHGHMLATTPIKESDI
        EGLL M+R M D A GGA+ NK  TE R LI+   +N        VKACG+C    H     P  + D+
Subjt:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN--------VKACGVCSIHGHMLATTPIKESDI

XP_031096820.1 uncharacterized protein LOC116001056 [Ipomoea triloba]1.3e-1135.67Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY
        VT++QI LR FPFS  D  R  + L   P   +  W +         F     A++ REI  I                            +QLL QYFY
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY

Query:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN-----------VKACGVCSIHGHMLATTPIKESD
        EGLL MER M D A GGA+VNK   E R LIS  I+N           VKACG+C+  GH     P  + D
Subjt:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN-----------VKACGVCSIHGHMLATTPIKESD

XP_031101885.1 uncharacterized protein LOC116005788 [Ipomoea triloba]9.0e-1032.97Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY
        VT++QI LRAFPFS  D  R  + L   P   +  W +         F     A++ REI  I                            +QLL QYFY
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY

Query:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN-------------------------VKACGVCSIHGHMLATTPIKESD
        EGLL MER M D A GGA+VNK   E R LIS    N                         VKACG+C+  GH     P  + D
Subjt:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN-------------------------VKACGVCSIHGHMLATTPIKESD

TrEMBL top hitse value%identityAlignment
A0A2G9GEL6 Retrotrans_gag domain-containing protein5.7e-1033.33Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQW--------HKFMGQEEATLLR-EILPI-----------------DQLLTQYFYEGLLSMERSMT
        VTDEQI LRAFPFS  D+ +  + L   P   V+ W         KF     AT +R EI  +                 +QLL QYFYEGLL MER M 
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQW--------HKFMGQEEATLLR-EILPI-----------------DQLLTQYFYEGLLSMERSMT

Query:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD
        D A GGA+VNK  +E R LIS                                             +Q VKACG+C+  GH     P  + D
Subjt:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD

A0A2G9HSE5 Retrotrans_gag domain-containing protein5.7e-1032.29Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFPVQQWHKFMGQEEATLLR-EILPI----------------------------DQLLTQYFYEGLLSMERSMT
        VTDEQI LRAFPFS  D+ +    L   P+    KF     AT +R EI  +                            +QLL QYFYEGLL MER M 
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFPVQQWHKFMGQEEATLLR-EILPI----------------------------DQLLTQYFYEGLLSMERSMT

Query:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD
        D A GGA+VNK  +E R LIS                                             +Q VKACG+C+  GH     P  + D
Subjt:  DVARGGALVNKMATETRVLISR-------------------------------------------PIQNVKACGVCSIHGHMLATTPIKESD

A0A6P6W2M4 uncharacterized protein LOC1137286189.8e-1031.95Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY
        +T+EQI +RAFPFS KD  +  + L   P   +  W +         F     A L +EI  I                            +QLL QYFY
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFP---VQQWHK---------FMGQEEATLLREILPI----------------------------DQLLTQYFY

Query:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN---------VKACGVCSIHGHMLATTPIKESD
        EGLL  +RS+ D A GGALVNK   E R LI   ++N          + CG+C+  GH     P+ + +
Subjt:  EGLLSMERSMTDVARGGALVNKMATETRVLISRPIQN---------VKACGVCSIHGHMLATTPIKESD

A0A6P6WYK5 uncharacterized protein LOC1137374848.3e-0937.86Show/hide
Query:  VTDEQISLRAFPFSWKDQVR------PSEALAIFPVQQ---WHK-FMGQEEATLLREILPI----------------------------DQLLTQYFYEG
        VTDEQI LRAFPFS KD  +      P+  +  +P  Q   + K F     A+L +EI  I                            DQLL QYFYEG
Subjt:  VTDEQISLRAFPFSWKDQVR------PSEALAIFPVQQ---WHK-FMGQEEATLLREILPI----------------------------DQLLTQYFYEG

Query:  LLSMERSMTDVARGGALVNKMATETRVLISRPIQNVKACG
        LL  +R++ D A GGALVNK   E   LI R  +N +  G
Subjt:  LLSMERSMTDVARGGALVNKMATETRVLISRPIQNVKACG

A0A7J0FIA0 Uncharacterized protein2.2e-0942.72Show/hide
Query:  VTDEQISLRAFPFSWKDQVRPSEALAIFPVQQWHKFMGQEEATLLREILPIDQLLTQYFYEGLLSMERSMTDVARGGALVNKMATETRVLISRPIQNVKA
        VT+EQI LRAFPFS KD  +            W  ++     T   E +  +QLL QYFYEGLL  +RSM D A GGALV+K     R LI+    N + 
Subjt:  VTDEQISLRAFPFSWKDQVRPSEALAIFPVQQWHKFMGQEEATLLREILPIDQLLTQYFYEGLLSMERSMTDVARGGALVNKMATETRVLISRPIQNVKA

Query:  CGV
         G+
Subjt:  CGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATCTTGCAAAGGAGGATTCACACAAACACCAGAGATAAGAACATTGTGACTGACGAGCAGATCAGTCTAAGAGCCTTCCCATTCTCCTGGAAAGACCAGGTGAG
ACCAAGTGAAGCATTAGCTATATTTCCTGTTCAACAGTGGCATAAATTCATGGGTCAAGAAGAAGCGACTCTTCTTAGAGAAATTCTTCCCATCGATCAACTTCTCACTC
AATACTTCTACGAAGGGTTATTGTCGATGGAAAGGAGCATGACTGACGTTGCTCGTGGAGGAGCACTCGTGAACAAGATGGCTACAGAGACTAGGGTTCTTATCTCGAGG
CCAATTCAGAATGTTAAGGCTTGTGGAGTTTGTTCTATCCATGGCCATATGCTAGCAACAACTCCAATCAAGGAATCAGATATATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATCTTGCAAAGGAGGATTCACACAAACACCAGAGATAAGAACATTGTGACTGACGAGCAGATCAGTCTAAGAGCCTTCCCATTCTCCTGGAAAGACCAGGTGAG
ACCAAGTGAAGCATTAGCTATATTTCCTGTTCAACAGTGGCATAAATTCATGGGTCAAGAAGAAGCGACTCTTCTTAGAGAAATTCTTCCCATCGATCAACTTCTCACTC
AATACTTCTACGAAGGGTTATTGTCGATGGAAAGGAGCATGACTGACGTTGCTCGTGGAGGAGCACTCGTGAACAAGATGGCTACAGAGACTAGGGTTCTTATCTCGAGG
CCAATTCAGAATGTTAAGGCTTGTGGAGTTTGTTCTATCCATGGCCATATGCTAGCAACAACTCCAATCAAGGAATCAGATATATGA
Protein sequenceShow/hide protein sequence
MQILQRRIHTNTRDKNIVTDEQISLRAFPFSWKDQVRPSEALAIFPVQQWHKFMGQEEATLLREILPIDQLLTQYFYEGLLSMERSMTDVARGGALVNKMATETRVLISR
PIQNVKACGVCSIHGHMLATTPIKESDI