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Lag0036069 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036069
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:38407359..38407700
RNA-Seq ExpressionLag0036069
SyntenyLag0036069
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU39028.1 hypothetical protein TSUD_59840 [Trifolium subterraneum]1.9e-0542.25Show/hide
Query:  RFEKLPDFCYECGRIGHITKDCEEKETEKGE--------EQRYGNWLKKYPAARGNYKSKKNQGHEEPSNN
        ++E+LP FC+ CGRIGH  ++CEE E + GE        E  +G WL+  P  R NY +KK  G    S N
Subjt:  RFEKLPDFCYECGRIGHITKDCEEKETEKGE--------EQRYGNWLKKYPAARGNYKSKKNQGHEEPSNN

KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-0542.59Show/hide
Query:  FEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQ
        +EKLPDFCY+CGR+GH+ ++C+E   +  E QR+G WL+K   ++   K ++ +
Subjt:  FEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQ

TXG49744.1 hypothetical protein EZV62_025619 [Acer yangbiense]3.2e-0545.45Show/hide
Query:  MRFEKLPDFCYECGRIGHITKDCEEKETEK----GEEQRYGNWLKKYPAARGNYK
        +++E+LPDFCY CGRIGH  K+C ++E  K    G   ++G+WLK   + + NYK
Subjt:  MRFEKLPDFCYECGRIGHITKDCEEKETEK----GEEQRYGNWLKKYPAARGNYK

XP_010684980.1 PREDICTED: uncharacterized protein LOC104899481 [Beta vulgaris subsp. vulgaris]5.5e-0547.73Show/hide
Query:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYP
        +++E+ P FC+ CG++GH+TKDCEE++ E+    +YG WLK  P
Subjt:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYP

XP_038716189.1 uncharacterized protein At4g02000-like [Tripterygium wilfordii]5.5e-0547.73Show/hide
Query:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYP
        +++E+LP+FCY CG++GH+  DCE  ET+  E + YG+WL+  P
Subjt:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYP

TrEMBL top hitse value%identityAlignment
A0A2Z6N2E1 Uncharacterized protein9.1e-0642.25Show/hide
Query:  RFEKLPDFCYECGRIGHITKDCEEKETEKGE--------EQRYGNWLKKYPAARGNYKSKKNQGHEEPSNN
        ++E+LP FC+ CGRIGH  ++CEE E + GE        E  +G WL+  P  R NY +KK  G    S N
Subjt:  RFEKLPDFCYECGRIGHITKDCEEKETEKGE--------EQRYGNWLKKYPAARGNYKSKKNQGHEEPSNN

A0A5C7IND1 CCHC-type domain-containing protein1.0e-0443.06Show/hide
Query:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQ----RYGNWLKKYPAARGNYKSKKNQG-HEEPSNNNER
        +++E+LPDFC+ CGRIGHI K+C ++E +KG  +    R+G WLK   + RG     + QG H   S+  ER
Subjt:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQ----RYGNWLKKYPAARGNYKSKKNQG-HEEPSNNNER

A0A5D3C0K2 Reverse transcriptase1.2e-0542.59Show/hide
Query:  FEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQ
        +EKLPDFCY+CGR+GH+ ++C+E   +  E QR+G WL+K   ++   K ++ +
Subjt:  FEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQ

E6ZE80 CCHC-type domain-containing protein2.2e-0438.57Show/hide
Query:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQGHEEPSNNNERARR
        +++EKLP FCY CG++GH TKDC+E   E+  +++YG WLK  P     +K +     +EP    +   R
Subjt:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQGHEEPSNNNERARR

Q5U6B2 Orf120b protein2.2e-0438.57Show/hide
Query:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQGHEEPSNNNERARR
        +++EKLP FCY CG++GH TKDC+E   E+  +++YG WLK  P     +K +     +EP    +   R
Subjt:  MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQGHEEPSNNNERARR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTGAAAAGCTACCAGACTTCTGTTACGAATGTGGAAGAATAGGACACATCACGAAAGATTGTGAAGAAAAAGAAACAGAAAAAGGAGAAGAACAACGATATGG
AAATTGGCTAAAGAAGTATCCGGCGGCTAGAGGAAACTACAAAAGCAAAAAGAACCAAGGACACGAAGAACCAAGTAACAACAATGAAAGAGCTCGAAGAGATCAAAGAA
TTGGGTCAGGAAGTCAAGAAAATTTAGGAAGAAATACCCAAAGAGAAGAAGAAAAACAGCAAACAAACCGGCGGCAAGGGGAATCGCCGAAAAATTCAGAAACCACCGGA
GAAGACAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTTGAAAAGCTACCAGACTTCTGTTACGAATGTGGAAGAATAGGACACATCACGAAAGATTGTGAAGAAAAAGAAACAGAAAAAGGAGAAGAACAACGATATGG
AAATTGGCTAAAGAAGTATCCGGCGGCTAGAGGAAACTACAAAAGCAAAAAGAACCAAGGACACGAAGAACCAAGTAACAACAATGAAAGAGCTCGAAGAGATCAAAGAA
TTGGGTCAGGAAGTCAAGAAAATTTAGGAAGAAATACCCAAAGAGAAGAAGAAAAACAGCAAACAAACCGGCGGCAAGGGGAATCGCCGAAAAATTCAGAAACCACCGGA
GAAGACAAATAG
Protein sequenceShow/hide protein sequence
MRFEKLPDFCYECGRIGHITKDCEEKETEKGEEQRYGNWLKKYPAARGNYKSKKNQGHEEPSNNNERARRDQRIGSGSQENLGRNTQREEEKQQTNRRQGESPKNSETTG
EDK