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Lag0036082 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036082
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:38641807..38642139
RNA-Seq ExpressionLag0036082
SyntenyLag0036082
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7809060.1 uncharacterized protein G2W53_035803 [Senna tora]1.1e-0531.07Show/hide
Query:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWV--VLS
        MA+ +G+ LA+ +GC +++V+ D +L + ++         ++A    I   S  F  ++F  IPR+CN+VAD I ++AR       W    P ++  VLS
Subjt:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWV--VLS

Query:  VNE
         +E
Subjt:  VNE

KAF7822782.1 ribonuclease H [Senna tora]4.8e-0632.04Show/hide
Query:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWV--VLS
        +AI +G+ LA+ +GC +L+VE D +L ++++         + A  + I + S +F  ++F  +PR+CNS AD I ++AR       W    P ++  VLS
Subjt:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWV--VLS

Query:  VNE
         +E
Subjt:  VNE

KNA15390.1 hypothetical protein SOVF_098710 [Spinacia oleracea]1.1e-0532.38Show/hide
Query:  AIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVNE
        A+   V  A   G   +IVESDC   +KL+  + K        +E I A + +F++++F    R CNSVA  IAK +  F+ +  W    P  V+ SV  
Subjt:  AIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVNE

Query:  DRFPL
        D+  +
Subjt:  DRFPL

XP_021807757.1 uncharacterized protein LOC110751579 [Prunus avium]6.3e-0633.33Show/hide
Query:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSW--VVLS
        +AI EG++     G + L+VE+D   A+  I+  T+ +G     +  I   S +F  ++F   PR+CN+VAD +AK A     I+ W    P W  V L 
Subjt:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSW--VVLS

Query:  VNEDRFPL
         + DR  L
Subjt:  VNEDRFPL

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]4.8e-0640.96Show/hide
Query:  EGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTW
        +G+RL   +  +K+IV+SDC+ A+ L LK       V   LE IW  S  F  INF  IPR  N +AD++AKR R   + + W
Subjt:  EGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTW

TrEMBL top hitse value%identityAlignment
A0A0K9R7A9 RNase H domain-containing protein5.2e-0632.38Show/hide
Query:  AIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVNE
        A+   V  A   G   +IVESDC   +KL+  + K        +E I A + +F++++F    R CNSVA  IAK +  F+ +  W    P  V+ SV  
Subjt:  AIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVNE

Query:  DRFPL
        D+  +
Subjt:  DRFPL

A0A314UDF4 RNase H domain-containing protein2.9e-0430.39Show/hide
Query:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVN
        +AI EG++ A   G   L+VE++   A+  I+   + +G     +  I   S +F  ++F   PR+CN+VAD +AK A     I+ W    P W+ + + 
Subjt:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVN

Query:  ED
         D
Subjt:  ED

A0A5E4FJR6 PREDICTED: Reverse mRNAase zinc-binding domain4.9e-0435.92Show/hide
Query:  GVRLAISLGCEKLIVESDC-ALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVNEDRF
        GV LA  LG +++IVE+D   L   +I    K    +   + AI    + FS  N+  IPR CN VAD IA  AR     + W    PS +V  +  D  
Subjt:  GVRLAISLGCEKLIVESDC-ALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVNEDRF

Query:  PLP
        P P
Subjt:  PLP

A0A6P5RZ31 uncharacterized protein LOC1107515793.1e-0633.33Show/hide
Query:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSW--VVLS
        +AI EG++     G + L+VE+D   A+  I+  T+ +G     +  I   S +F  ++F   PR+CN+VAD +AK A     I+ W    P W  V L 
Subjt:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSW--VVLS

Query:  VNEDRFPL
         + DR  L
Subjt:  VNEDRFPL

A0A7H4L9Z4 Genome assembly, chromosome: II8.3e-0430.39Show/hide
Query:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVN
        +A+  G++L+ S GC +L+V SD    M+++ K+ +Y G   A ++  +  +  FS I F L PR  N VA  +A  AR     + W  + P+ ++  ++
Subjt:  MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVN

Query:  ED
        +D
Subjt:  ED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATCGATGAAGGAGTTCGACTGGCGATTTCCCTTGGCTGTGAGAAATTGATAGTGGAGAGTGACTGTGCGTTGGCTATGAAACTGATTTTGAAGGAAACAAAGTA
TTGGGGTGAGGTGGATGCTAGTTTAGAGGCCATCTGGGCTTCTTCTCATTCTTTCAGCATTATTAATTTCTGTTTAATTCCAAGGGTTTGTAACTCAGTGGCAGACTTAA
TTGCTAAGAGAGCAAGAGAGTTTAGTTTGATTAATACTTGGGCTTCTCTTTTCCCAAGTTGGGTTGTATTGTCGGTCAATGAGGACCGTTTTCCGTTGCCCTTCGTGGCG
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATCGATGAAGGAGTTCGACTGGCGATTTCCCTTGGCTGTGAGAAATTGATAGTGGAGAGTGACTGTGCGTTGGCTATGAAACTGATTTTGAAGGAAACAAAGTA
TTGGGGTGAGGTGGATGCTAGTTTAGAGGCCATCTGGGCTTCTTCTCATTCTTTCAGCATTATTAATTTCTGTTTAATTCCAAGGGTTTGTAACTCAGTGGCAGACTTAA
TTGCTAAGAGAGCAAGAGAGTTTAGTTTGATTAATACTTGGGCTTCTCTTTTCCCAAGTTGGGTTGTATTGTCGGTCAATGAGGACCGTTTTCCGTTGCCCTTCGTGGCG
TAA
Protein sequenceShow/hide protein sequence
MAIDEGVRLAISLGCEKLIVESDCALAMKLILKETKYWGEVDASLEAIWASSHSFSIINFCLIPRVCNSVADLIAKRAREFSLINTWASLFPSWVVLSVNEDRFPLPFVA