; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036085 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036085
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase
Genome locationchr3:38741803..38743446
RNA-Seq ExpressionLag0036085
SyntenyLag0036085
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040718.1 integrase [Cucumis melo var. makuwa]4.6e-10457.11Show/hide
Query:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG
        LLLQR L IFY+ PIKEKI            R+VE+ILRSMPRKFEHIVV IEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQT FRG S G
Subjt:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG

Query:  RQSSSSSRGRRGG-RGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------
        R+     RG RG  RG+ FGRNQG G GNFS  QCFNC+KYGHFQADCWALKNG GN+TM MHKE+ KNDE                             
Subjt:  RQSSSSSRGRRGG-RGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------

Query:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL
        GN SIFVTLDES QSEVKTGDNT LQVKG+ DILVKTKK TK+V + FYVP                             +Q  VLIAK+K        L
Subjt:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL

Query:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL
        +   G    I F  FFK QGIHH+ TARMTPQ NGV +RKNRTIM+MARS                                 MTPYEAWCGEKP  SHL
Subjt:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL

Query:  RVFGSIAYSHIPDKLRGKLDDK
        RVFGSIAYS+I ++LRGKLDDK
Subjt:  RVFGSIAYSHIPDKLRGKLDDK

KAA0060377.1 integrase [Cucumis melo var. makuwa]1.1e-9744.64Show/hide
Query:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS
        R+VEKILRSMPRKFEHIVVAIEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRG S GR                         +SSS 
Subjt:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS

Query:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV
        SRGR  GRG+ FGRNQG G GNFS  QCFNC KYGHFQA+CWALKNG GN+TM MHKE+K  DE                             GN SIFV
Subjt:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV

Query:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM
        TLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP                             +Q GVLIAKVKM ANKMFPL FTYGQ+
Subjt:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM

Query:  NA--------------------------------------------------------------------------------------------------
        +                                                                                                   
Subjt:  NA--------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------
                                                       I F  FFK QGIHH+ TARMTPQ NGV ERKNRTIMEMARS            
Subjt:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------

Query:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK
                             MTPYEAWCGEKP  SHLRVFGSIAYSHIP++LRGKLDDK
Subjt:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK

TYJ95504.1 integrase [Cucumis melo var. makuwa]1.1e-9744.64Show/hide
Query:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS
        R+VEKILRSMPRKFEHIVVAIEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRG S GR                         +SSS 
Subjt:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS

Query:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV
        SRGR  GRG+ FGRNQG G GNFS  QCFNC KYGHFQA+CWALKNG GN+TM MHKE+K  DE                             GN SIFV
Subjt:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV

Query:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM
        TLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP                             +Q GVLIAKVKM ANKMFPL FTYGQ+
Subjt:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM

Query:  NA--------------------------------------------------------------------------------------------------
        +                                                                                                   
Subjt:  NA--------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------
                                                       I F  FFK QGIHH+ TARMTPQ NGV ERKNRTIMEMARS            
Subjt:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------

Query:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK
                             MTPYEAWCGEKP  SHLRVFGSIAYSHIP++LRGKLDDK
Subjt:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK

TYK05177.1 integrase [Cucumis melo var. makuwa]2.7e-10456.97Show/hide
Query:  QHLLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDS
        Q LLLQR L IFY+ PIKEKI            R+ EKILRSMPRKFEHIVVAIEESKDLSTLS+NSLMGSLQS+ELR KQFDVNPEEAFQMQTSFRG S
Subjt:  QHLLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDS

Query:  YGR-------------------------QSSSSSRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE---
         GR                         +SSS S+GR   RG+ FGRNQG G GNFS  QCFNC+KYGHFQADCWALKNG GN+TM MHKE+ KNDE   
Subjt:  YGR-------------------------QSSSSSRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE---

Query:  --------------------------GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVPNQTGVLIAKVKMNANKMFPLKFT
                                  GN SIFVTLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP     L++  ++       LK +
Subjt:  --------------------------GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVPNQTGVLIAKVKMNANKMFPLKFT

Query:  YGQMNAIVFDK----FFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASH
        +      + D+      K QGIHH+ TARMTPQ NGV ERKNRTIMEMARS                                 MTPYEAWCGEKP  SH
Subjt:  YGQMNAIVFDK----FFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASH

Query:  LRVFGSIAYSHIPDKLRGKLDDK
        LRVFGSIAYSHIP++LRGKLDDK
Subjt:  LRVFGSIAYSHIPDKLRGKLDDK

TYK15348.1 integrase [Cucumis melo var. makuwa]1.5e-10758.06Show/hide
Query:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG
        LLLQR L IFY+ PIKEKI            R+VE+ILRSMPRKFEHIVV IEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQT FRG S G
Subjt:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG

Query:  RQSSSSSRGRRG-GRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------
        R+     RG RG GRG+ FGRNQG G GNFS  QCFNC+KYGHFQADCWALKNG GN+TM MHKE+ KNDE                             
Subjt:  RQSSSSSRGRRG-GRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------

Query:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL
        GN SIFVTLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP                             +Q GVLIAK+K        L
Subjt:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL

Query:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL
        +   G    I F  FFK QGIHH+ TARMTPQ NGV +RKNRTIM+MARS                                 MTPYEAWCGEKP  SHL
Subjt:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL

Query:  RVFGSIAYSHIPDKLRGKLDDK
        RVFGSIAYS+I ++LRGKLDDK
Subjt:  RVFGSIAYSHIPDKLRGKLDDK

TrEMBL top hitse value%identityAlignment
A0A5A7TCS4 Integrase2.2e-10457.11Show/hide
Query:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG
        LLLQR L IFY+ PIKEKI            R+VE+ILRSMPRKFEHIVV IEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQT FRG S G
Subjt:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG

Query:  RQSSSSSRGRRGG-RGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------
        R+     RG RG  RG+ FGRNQG G GNFS  QCFNC+KYGHFQADCWALKNG GN+TM MHKE+ KNDE                             
Subjt:  RQSSSSSRGRRGG-RGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------

Query:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL
        GN SIFVTLDES QSEVKTGDNT LQVKG+ DILVKTKK TK+V + FYVP                             +Q  VLIAK+K        L
Subjt:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL

Query:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL
        +   G    I F  FFK QGIHH+ TARMTPQ NGV +RKNRTIM+MARS                                 MTPYEAWCGEKP  SHL
Subjt:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL

Query:  RVFGSIAYSHIPDKLRGKLDDK
        RVFGSIAYS+I ++LRGKLDDK
Subjt:  RVFGSIAYSHIPDKLRGKLDDK

A0A5D3BQ81 Integrase5.3e-9844.64Show/hide
Query:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS
        R+VEKILRSMPRKFEHIVVAIEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRG S GR                         +SSS 
Subjt:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS

Query:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV
        SRGR  GRG+ FGRNQG G GNFS  QCFNC KYGHFQA+CWALKNG GN+TM MHKE+K  DE                             GN SIFV
Subjt:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV

Query:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM
        TLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP                             +Q GVLIAKVKM ANKMFPL FTYGQ+
Subjt:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM

Query:  NA--------------------------------------------------------------------------------------------------
        +                                                                                                   
Subjt:  NA--------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------
                                                       I F  FFK QGIHH+ TARMTPQ NGV ERKNRTIMEMARS            
Subjt:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------

Query:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK
                             MTPYEAWCGEKP  SHLRVFGSIAYSHIP++LRGKLDDK
Subjt:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK

A0A5D3C044 Integrase1.3e-10456.97Show/hide
Query:  QHLLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDS
        Q LLLQR L IFY+ PIKEKI            R+ EKILRSMPRKFEHIVVAIEESKDLSTLS+NSLMGSLQS+ELR KQFDVNPEEAFQMQTSFRG S
Subjt:  QHLLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDS

Query:  YGR-------------------------QSSSSSRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE---
         GR                         +SSS S+GR   RG+ FGRNQG G GNFS  QCFNC+KYGHFQADCWALKNG GN+TM MHKE+ KNDE   
Subjt:  YGR-------------------------QSSSSSRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE---

Query:  --------------------------GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVPNQTGVLIAKVKMNANKMFPLKFT
                                  GN SIFVTLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP     L++  ++       LK +
Subjt:  --------------------------GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVPNQTGVLIAKVKMNANKMFPLKFT

Query:  YGQMNAIVFDK----FFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASH
        +      + D+      K QGIHH+ TARMTPQ NGV ERKNRTIMEMARS                                 MTPYEAWCGEKP  SH
Subjt:  YGQMNAIVFDK----FFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASH

Query:  LRVFGSIAYSHIPDKLRGKLDDK
        LRVFGSIAYSHIP++LRGKLDDK
Subjt:  LRVFGSIAYSHIPDKLRGKLDDK

A0A5D3CLV1 Integrase5.3e-9844.64Show/hide
Query:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS
        R+VEKILRSMPRKFEHIVVAIEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRG S GR                         +SSS 
Subjt:  RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGR-------------------------QSSSS

Query:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV
        SRGR  GRG+ FGRNQG G GNFS  QCFNC KYGHFQA+CWALKNG GN+TM MHKE+K  DE                             GN SIFV
Subjt:  SRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEEKN-DE-----------------------------GNSSIFV

Query:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM
        TLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP                             +Q GVLIAKVKM ANKMFPL FTYGQ+
Subjt:  TLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPLKFTYGQM

Query:  NA--------------------------------------------------------------------------------------------------
        +                                                                                                   
Subjt:  NA--------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------
                                                       I F  FFK QGIHH+ TARMTPQ NGV ERKNRTIMEMARS            
Subjt:  -----------------------------------------------IVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS------------

Query:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK
                             MTPYEAWCGEKP  SHLRVFGSIAYSHIP++LRGKLDDK
Subjt:  ---------------------MTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK

A0A5D3CVS4 Integrase7.4e-10858.06Show/hide
Query:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG
        LLLQR L IFY+ PIKEKI            R+VE+ILRSMPRKFEHIVV IEESKDLSTLS+NSLMGSLQSHELRLKQFDVNPEEAFQMQT FRG S G
Subjt:  LLLQRWLGIFYNPPIKEKI------------RIVEKILRSMPRKFEHIVVAIEESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYG

Query:  RQSSSSSRGRRG-GRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------
        R+     RG RG GRG+ FGRNQG G GNFS  QCFNC+KYGHFQADCWALKNG GN+TM MHKE+ KNDE                             
Subjt:  RQSSSSSRGRRG-GRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTM-MHKEE-KNDE-----------------------------

Query:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL
        GN SIFVTLDES QSEVKTGDNTRLQVKG+GDILVKTKK TK+V + FYVP                             +Q GVLIAK+K        L
Subjt:  GNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVP-----------------------------NQTGVLIAKVKMNANKMFPL

Query:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL
        +   G    I F  FFK QGIHH+ TARMTPQ NGV +RKNRTIM+MARS                                 MTPYEAWCGEKP  SHL
Subjt:  KFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARS---------------------------------MTPYEAWCGEKPCASHL

Query:  RVFGSIAYSHIPDKLRGKLDDK
        RVFGSIAYS+I ++LRGKLDDK
Subjt:  RVFGSIAYSHIPDKLRGKLDDK

SwissProt top hitse value%identityAlignment
P04146 Copia protein7.6e-0936.94Show/hide
Query:  KFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARSM-----------------------------------TPYEAWCGEKPCASHLRVFGSIAYSHI
        +F   +GI +  T   TPQ NGV+ER  RTI E AR+M                                   TPYE W  +KP   HLRVFG+  Y HI
Subjt:  KFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARSM-----------------------------------TPYEAWCGEKPCASHLRVFGSIAYSHI

Query:  PDKLRGKLDDK
         +K +GK DDK
Subjt:  PDKLRGKLDDK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-1330.86Show/hide
Query:  LVKTKKDTKQVVDEFY--VPNQTGVLIAKVKMNANKMFPLKFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARSM---------
        ++KTK    QV  +F+  V  +TG  + +++ +           G+  +  F+++  + GI HE+T   TPQHNGV ER NRTI+E  RSM         
Subjt:  LVKTKKDTKQVVDEFY--VPNQTGVLIAKVKMNANKMFPLKFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHNGVTERKNRTIMEMARSM---------

Query:  ------------------------TPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK
                                 P   W  ++   SHL+VFG  A++H+P + R KLDDK
Subjt:  ------------------------TPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAAATGGGATGGGCTTTACACTTATATGGCTCACAAGAATTGTGGTACATTGTTGAAAGATGATACACTGAAGTTGAGAATCAGAACGAGCTCACTAATCAACAA
CTTGCTGAGTTTCGACAAAATCGCAAGAAAGACAAGAAGGCTTTGTTCTTCATTTATCAAGTTGTTGATGAACATGTCTTCGAAAGAATTTCAACATCTACTTCTGCAAA
GGTGGCTTGGGATATTTTACAATCCACCTATCAAAGAGAAGATAAGAATTGTTGAAAAGATTCTTAGAAGTATGCCAAGAAAGTTTGAGCATATTGTCGTTGCAATTGAA
GAATCAAAAGATTTATCTACACTATCAGTAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTTAGATTGAAGCAATTTGATGTTAATCCCGAGGAAGCATTTCAAAT
GCAAACTTCATTCAGAGGCGATTCTTATGGAAGACAAAGCTCGTCTTCATCTCGAGGAAGAAGAGGTGGAAGAGGAAAAGACTTTGGCAGAAATCAAGGAAGTGGTTGTG
GTAATTTTTCTCACACTCAATGTTTTAATTGCAAGAAGTATGGTCATTTTCAAGCAGATTGTTGGGCATTGAAAAATGGAGATGGAAATTCCACCATGATGCATAAAGAG
GAGAAAAATGATGAAGGAAATAGTAGTATATTTGTTACTTTGGATGAATCTCTCCAAAGTGAAGTGAAAACTGGTGATAATACCAGATTGCAAGTCAAAGGTCGAGGTGA
TATTCTAGTTAAGACGAAGAAAGACACAAAACAAGTTGTGGATGAGTTTTATGTTCCAAATCAGACTGGTGTTCTTATTGCCAAGGTAAAAATGAATGCTAATAAGATGT
TTCCTCTTAAATTTACATATGGACAAATGAATGCTATAGTTTTTGATAAATTTTTCAAGGCACAAGGTATTCATCATGAACAGACAGCTCGAATGACTCCACAACATAAT
GGAGTTACAGAGAGAAAGAATAGAACAATCATGGAGATGGCGAGAAGTATGACTCCTTATGAAGCATGGTGTGGTGAGAAACCATGTGCTAGTCACTTGAGAGTTTTTGG
GAGTATAGCTTATTCTCATATACCAGATAAGCTAAGAGGCAAGTTAGATGATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAAATGGGATGGGCTTTACACTTATATGGCTCACAAGAATTGTGGTACATTGTTGAAAGATGATACACTGAAGTTGAGAATCAGAACGAGCTCACTAATCAACAA
CTTGCTGAGTTTCGACAAAATCGCAAGAAAGACAAGAAGGCTTTGTTCTTCATTTATCAAGTTGTTGATGAACATGTCTTCGAAAGAATTTCAACATCTACTTCTGCAAA
GGTGGCTTGGGATATTTTACAATCCACCTATCAAAGAGAAGATAAGAATTGTTGAAAAGATTCTTAGAAGTATGCCAAGAAAGTTTGAGCATATTGTCGTTGCAATTGAA
GAATCAAAAGATTTATCTACACTATCAGTAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTTAGATTGAAGCAATTTGATGTTAATCCCGAGGAAGCATTTCAAAT
GCAAACTTCATTCAGAGGCGATTCTTATGGAAGACAAAGCTCGTCTTCATCTCGAGGAAGAAGAGGTGGAAGAGGAAAAGACTTTGGCAGAAATCAAGGAAGTGGTTGTG
GTAATTTTTCTCACACTCAATGTTTTAATTGCAAGAAGTATGGTCATTTTCAAGCAGATTGTTGGGCATTGAAAAATGGAGATGGAAATTCCACCATGATGCATAAAGAG
GAGAAAAATGATGAAGGAAATAGTAGTATATTTGTTACTTTGGATGAATCTCTCCAAAGTGAAGTGAAAACTGGTGATAATACCAGATTGCAAGTCAAAGGTCGAGGTGA
TATTCTAGTTAAGACGAAGAAAGACACAAAACAAGTTGTGGATGAGTTTTATGTTCCAAATCAGACTGGTGTTCTTATTGCCAAGGTAAAAATGAATGCTAATAAGATGT
TTCCTCTTAAATTTACATATGGACAAATGAATGCTATAGTTTTTGATAAATTTTTCAAGGCACAAGGTATTCATCATGAACAGACAGCTCGAATGACTCCACAACATAAT
GGAGTTACAGAGAGAAAGAATAGAACAATCATGGAGATGGCGAGAAGTATGACTCCTTATGAAGCATGGTGTGGTGAGAAACCATGTGCTAGTCACTTGAGAGTTTTTGG
GAGTATAGCTTATTCTCATATACCAGATAAGCTAAGAGGCAAGTTAGATGATAAATGA
Protein sequenceShow/hide protein sequence
MLKWDGLYTYMAHKNCGTLLKDDTLKLRIRTSSLINNLLSFDKIARKTRRLCSSFIKLLMNMSSKEFQHLLLQRWLGIFYNPPIKEKIRIVEKILRSMPRKFEHIVVAIE
ESKDLSTLSVNSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGDSYGRQSSSSSRGRRGGRGKDFGRNQGSGCGNFSHTQCFNCKKYGHFQADCWALKNGDGNSTMMHKE
EKNDEGNSSIFVTLDESLQSEVKTGDNTRLQVKGRGDILVKTKKDTKQVVDEFYVPNQTGVLIAKVKMNANKMFPLKFTYGQMNAIVFDKFFKAQGIHHEQTARMTPQHN
GVTERKNRTIMEMARSMTPYEAWCGEKPCASHLRVFGSIAYSHIPDKLRGKLDDK