CuGenDBv2

Gene ID	Lag0036087
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Integrase
Genome location	chr3:38744614..38745033
RNA-Seq Expression	Lag0036087
Synteny	Lag0036087
Gene Ontology terms	GO:0006952 - defense response (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043531 - ADP binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ABR67407.1 integrase [Cucumis melo subsp. melo]

1.8e-42

74.8

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL K+DI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYYKK  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSGASTCRTGKSN
        +STSGYVFS+GSG  +  + K +
Subjt:  KSTSGYVFSIGSGASTCRTGKSN

KAA0040718.1 integrase [Cucumis melo var. makuwa]

2.4e-42

81.42

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL KNDI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYY K  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KS SGYVFSIGSG
Subjt:  KSTSGYVFSIGSG

KAA0063963.1 integrase [Cucumis melo var. makuwa]

1.1e-42

81.42

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL K+DI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYYKK  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KSTSGYVFS+GSG
Subjt:  KSTSGYVFSIGSG

TYK00495.1 integrase [Cucumis melo var. makuwa]

3.1e-42

80.53

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL K+DI E VDPSLYR    SLMYLTATRP+ILF VSML+RFMT+ KR HWE GK+VLRYILG INFGIYYKK  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KSTSGYVFS+GSG
Subjt:  KSTSGYVFSIGSG

TYK15348.1 integrase [Cucumis melo var. makuwa]

2.4e-42

81.42

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL KNDI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYY K  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KS SGYVFSIGSG
Subjt:  KSTSGYVFSIGSG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TCS4 Integrase

1.1e-42

81.42

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL KNDI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYY K  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KS SGYVFSIGSG
Subjt:  KSTSGYVFSIGSG

A0A5A7V774 Integrase

5.2e-43

81.42

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL K+DI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYYKK  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KSTSGYVFS+GSG
Subjt:  KSTSGYVFSIGSG

A0A5D3BN22 Integrase

1.5e-42

80.53

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL K+DI E VDPSLYR    SLMYLTATRP+ILF VSML+RFMT+ KR HWE GK+VLRYILG INFGIYYKK  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KSTSGYVFS+GSG
Subjt:  KSTSGYVFSIGSG

A0A5D3CVS4 Integrase

1.1e-42

81.42

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL KNDI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYY K  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSG
        KS SGYVFSIGSG
Subjt:  KSTSGYVFSIGSG

A6YTD9 Integrase

8.8e-43

74.8

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Query:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH
        MDANLKL K+DI E VDPSLYR    SLMYLTATRP+ILFVVSML+RFMT+ KR HWE GK+VLRYILG INFGIYYKK  E VL GFCDSDWGGNVDDH
Subjt:  MDANLKLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDH

Query:  KSTSGYVFSIGSGASTCRTGKSN
        +STSGYVFS+GSG  +  + K +
Subjt:  KSTSGYVFSIGSGASTCRTGKSN

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.5e-10

38.46

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Query:  SLYRSLMY-LTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDP--EPVLVGFCDSDWGGNVDDHKSTSGYVFSI
        SL   LMY +  TRP++   V++L+R+ +      W+  K+VLRY+ G I+  + +KK+   E  ++G+ DSDW G+  D KST+GY+F +
Subjt:  SLYRSLMY-LTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDP--EPVLVGFCDSDWGGNVDDHKSTSGYVFSI

P0CV72 Secreted RxLR effector protein 161

2.7e-12

35.42

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Query:  SLMYL-TATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIGSGASTCRTGK
        ++MYL   TRP++   V +L++F +     HW+  K+VLRY+     +G+ + +     LVG+ D+DW G+V+  +STSGY+F +  G  + R+ K
Subjt:  SLMYL-TATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIGSGASTCRTGK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-10

37.08

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Query:  SLMY-LTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIGSGA
        SLMY +  TRP+I   V +++RF+ +  + HWE  K +LRY+ G     + +    +P+L G+ D+D  G++D+ KS++GY+F+   GA
Subjt:  SLMY-LTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIGSGA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.1e-13

36.97

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Query:  KLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSG
        KLS     +  DP+ YR    SL YL  TRP+I + V+ L++FM      H +  K++LRY+ G  N GI+ KK     L  + D+DW G+ DD+ ST+G
Subjt:  KLSKNDIREDVDPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSG

Query:  YVFSIGSGASTCRTGKSNG
        Y+  +G    +  + K  G
Subjt:  YVFSIGSGASTCRTGKSNG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.8e-13

37.04

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Query:  DPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIGSGAST
        DP+ YR    SL YL  TRP++ + V+ L+++M      HW   K+VLRY+ G  + GI+ KK     L  + D+DW G+ DD+ ST+GY+  +G    +
Subjt:  DPSLYR----SLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIGSGAST

Query:  CRTGKSNG
          + K  G
Subjt:  CRTGKSNG

Arabidopsis top hits

e value

%identity

Alignment

ATMG00240.1 Gag-Pol-related retrotransposon family protein

2.2e-09

33.33

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Query:  MYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGY
        MYLT TRP++ F V+ L++F ++ +    +   +VL Y+ G +  G++Y    +  L  F DSDW    D  +S +G+
Subjt:  MYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGY

ATMG00810.1 DNA/RNA polymerases superfamily protein

1.0e-11

37.89

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Query:  DPSLYRS----LMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIG
        DPS +RS    L YLT TRP+I + V+++ + M       ++  K+VLRY+ G I  G+Y  K+ +  +  FCDSDW G     +ST+G+   +G
Subjt:  DPSLYRS----LMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIG

Sequences

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CDS sequence

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ATGGATGCAAATTTGAAATTGAGCAAGAATGATATTAGAGAAGATGTTGATCCAAGCTTATATCGAAGCTTGATGTACTTGACCGCAACAAGACCTAATATTCTATTTGT
TGTAAGTATGTTAACCAGATTCATGACAAGCTGGAAAAGATGTCATTGGGAAACAGGTAAGCAAGTGCTTCGTTACATTCTTGGCAACATTAATTTTGGAATTTATTACA
AGAAAGATCCAGAACCAGTGTTAGTTGGTTTTTGTGATAGTGATTGGGGTGGTAACGTTGATGATCATAAAAGTACATCTGGTTATGTTTTTAGCATTGGTTCAGGTGCT
TCCACGTGTCGCACAGGGAAATCGAACGGCAGAGCTGTTGGACAGCACATCATTATGGTAAAATATTACCGTTTTGAAATTTTAATTTGA

mRNA sequence

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Protein sequence

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MDANLKLSKNDIREDVDPSLYRSLMYLTATRPNILFVVSMLTRFMTSWKRCHWETGKQVLRYILGNINFGIYYKKDPEPVLVGFCDSDWGGNVDDHKSTSGYVFSIGSGA
STCRTGKSNGRAVGQHIIMVKYYRFEILI

Lag0036087 (gene) of Sponge gourd (AG-4) v1 genome