; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036099 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036099
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr3:38992731..38993907
RNA-Seq ExpressionLag0036099
SyntenyLag0036099
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN77207.1 hypothetical protein VITISV_014785 [Vitis vinifera]1.5e-4832.47Show/hide
Query:  MYRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRA------------
        + R FLW G  E K  HL++W  V  P I GGLGI  I  +N +LL KW+WRF  E  +LW  VI S YG       W+ + + + +             
Subjt:  MYRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRA------------

Query:  ---------EDIWLGSSSLKVQYPSLYHLALKKEGTIAE-FWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIK-NEEDTWFWRLGNSGIFSKR--
                 ED+W G  +LK QYP L+ + + K   I+    +    SWN + RRNL + EI +   L H+L   ++  +  D   W L +SG+F+ +  
Subjt:  ---------EDIWLGSSSLKVQYPSLYHLALKKEGTIAE-FWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIK-NEEDTWFWRLGNSGIFSKR--

Query:  -TLLQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFAR
         T L QM  SS    T     +WK  +P KVK F+W ++H  ++T D++Q R P   +SP  C +C +  E+  HLF  C      W  L Q     +  
Subjt:  -TLLQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFAR

Query:  PGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSLTSHW
        P  I  ++     G    K   ++W N   A +W +W ERNARIF D+ ++  +  +S  FLA  W+     F    L+ L   W
Subjt:  PGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSLTSHW

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-5432.48Show/hide
Query:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI---------------------------
        +R FLW G        L++W+ + SP  +GGLGI  ++  N +LL KW+W+F +E D LW+ +I SKY   K+                           
Subjt:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI---------------------------

Query:  -HTSWEISLLTLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLG
         + SW+++       EDI      W G++ L +  P L+ L+  K+G++ EFWNP    W+LH+ R L + E   W  +  +L             W L 
Subjt:  -HTSWEISLLTLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLG

Query:  NSGIFSKRTLLQQMAS---SSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYL
        ++ IF   ++ + +A    S  N   +LY  LWK   PKK KFF+W + H CI+T D +Q+R P   LSP  C MC K+ E   HLF  C Y+   WS  
Subjt:  NSGIFSKRTLLQQMAS---SSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYL

Query:  QQAFGWQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL
        +    W  + P D+ +LI   I     R  K LI  N     LW +WLERN RIF  + ++     E T      WS     F NY   S+
Subjt:  QQAFGWQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-5232.64Show/hide
Query:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-
        +R FLW G        L++W+ V SP  +GGLGI  +H  N +LL KW+W+F +E + LW+ +I SKY   K+            ++ W+     IS   
Subjt:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-

Query:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF
              +   EDI      W G+S L +  P L+ L+  K+G++ + WNP    WN+H+ R L + E   W  +  +L             W+L ++ IF
Subjt:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF

Query:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG
           ++   L + ++S  N    LY  LWK   PKK KFF+W + H CI+T D +Q+R P   LSP  C MC K+ E   HLF  C Y+   WS  Q    
Subjt:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG

Query:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL
        W  + P D+ +L    I     +  K LI  N +   LW +WLERN RIF  + +      E        WS     F NY   S+
Subjt:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-5232.64Show/hide
Query:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-
        +R FLW G        L++W+ V SP  +GGLGI  +H  N +LL KW+W+F +E + LW+ +I SKY   K+            ++ W+     IS   
Subjt:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-

Query:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF
              +   EDI      W G+S L +  P L+ L+  K+G++ + WNP    WN+H+ R L + E   W  +  +L             W+L ++ IF
Subjt:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF

Query:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG
           ++   L + ++S  N    LY  LWK   PKK KFF+W + H CI+T D +Q+R P   LSP  C MC K+ E   HLF  C Y+   WS  Q    
Subjt:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG

Query:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL
        W  + P D+ +L    I     +  K LI  N +   LW +WLERN RIF  + +      E        WS     F NY   S+
Subjt:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL

RVW29541.1 Kinesin-like protein KIN-14I [Vitis vinifera]3.3e-5135.76Show/hide
Query:  RLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRAEDIWLGSSSLKVQY
        R FLW G  E K  HL++W  V  P ++GGLGI  I  +N +LL KW+WRF  E  +LW  VI S YG       W+ + +     ED+W G   LK QY
Subjt:  RLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRAEDIWLGSSSLKVQY

Query:  PSLYHLALKKEGTIAE-FWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEE-DTWFWRLGNSGIFSKR---TLLQQMASSSQNSSTDLYGQLW
        P LY + + K   I+    +P   SWN + RRNL ++EI +   L H+L   ++     D   W L +SG+F+ +   T L QM  SS    T     +W
Subjt:  PSLYHLALKKEGTIAE-FWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEE-DTWFWRLGNSGIFSKR---TLLQQMASSSQNSSTDLYGQLW

Query:  KGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFARPGDIHTLISFAILGHPFRKDKKL
        K  +P KVK FVW ++H  ++T D++Q R P    SP  C +C +  E+  HLF  C      W  L Q     +  P  I  ++     G    K   +
Subjt:  KGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFARPGDIHTLISFAILGHPFRKDKKL

Query:  IWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWS
        +W N   A +W +W ERN RIF D+ +++ +  +S  FLA FW+
Subjt:  IWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWS

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein6.9e-5532.48Show/hide
Query:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI---------------------------
        +R FLW G        L++W+ + SP  +GGLGI  ++  N +LL KW+W+F +E D LW+ +I SKY   K+                           
Subjt:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI---------------------------

Query:  -HTSWEISLLTLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLG
         + SW+++       EDI      W G++ L +  P L+ L+  K+G++ EFWNP    W+LH+ R L + E   W  +  +L             W L 
Subjt:  -HTSWEISLLTLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLG

Query:  NSGIFSKRTLLQQMAS---SSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYL
        ++ IF   ++ + +A    S  N   +LY  LWK   PKK KFF+W + H CI+T D +Q+R P   LSP  C MC K+ E   HLF  C Y+   WS  
Subjt:  NSGIFSKRTLLQQMAS---SSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYL

Query:  QQAFGWQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL
        +    W  + P D+ +LI   I     R  K LI  N     LW +WLERN RIF  + ++     E T      WS     F NY   S+
Subjt:  QQAFGWQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein6.4e-5332.64Show/hide
Query:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-
        +R FLW G        L++W+ V SP  +GGLGI  +H  N +LL KW+W+F +E + LW+ +I SKY   K+            ++ W+     IS   
Subjt:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-

Query:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF
              +   EDI      W G+S L +  P L+ L+  K+G++ + WNP    WN+H+ R L + E   W  +  +L             W+L ++ IF
Subjt:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF

Query:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG
           ++   L + ++S  N    LY  LWK   PKK KFF+W + H CI+T D +Q+R P   LSP  C MC K+ E   HLF  C Y+   WS  Q    
Subjt:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG

Query:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL
        W  + P D+ +L    I     +  K LI  N +   LW +WLERN RIF  + +      E        WS     F NY   S+
Subjt:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.1e-5232.64Show/hide
Query:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-
        +R FLW G        L++W+ V SP  +GGLGI  +H  N +LL KW+W+F +E + LW+ +I SKY   K+            ++ W+     IS   
Subjt:  YRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKI------------HTSWE-----ISLL-

Query:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF
              +   EDI      W G+S L +  P L+ L+  K+G++ + WNP    WN+H+ R L + E   W  +  +L             W+L ++ IF
Subjt:  -----TLPRAEDI------WLGSSSLKVQYPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIF

Query:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG
           ++   L + ++S  N    LY  LWK   PKK KFF+W + H CI+T D +Q+R P   LSP  C MC K+ E   HLF  C Y+   WS  Q    
Subjt:  SKRTL---LQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFG

Query:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL
        W  + P D+ +L    I     +  K LI  N +   LW +WLERN RIF  + +      E        WS     F NY   S+
Subjt:  WQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSL

A5B0H6 Reverse transcriptase domain-containing protein7.4e-4932.87Show/hide
Query:  MYRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRA-EDIWLGSSSLK
        + R FLW G  E K  HL++W IV  P   GGLG+ +I  +N++LL KW+WR+  E  ALW   IA  +    + T + +      R  ED+W G   L 
Subjt:  MYRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRA-EDIWLGSSSLK

Query:  VQYPSLYHLALKKEGTIAEFWNPI-DGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIK-NEEDTWFWRLGNSGIFSKRTLLQQMASSSQNSSTDLYGQLW
         QYP L+ + + K  +I+    P     WNL+ RRNL ++EI +   L  +L +  +  +  D   W L +SG+FS ++    ++ SS +S       +W
Subjt:  VQYPSLYHLALKKEGTIAEFWNPI-DGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIK-NEEDTWFWRLGNSGIFSKRTLLQQMASSSQNSSTDLYGQLW

Query:  KGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFARPGDIHTLISFAILGHPFRKDKKL
           +P KVK FVW ++H  ++T D++Q R P   LSP  CI+C K  E+  HLF  C      W  L Q     +  P  I+ ++S    G    K   +
Subjt:  KGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFARPGDIHTLISFAILGHPFRKDKKL

Query:  IWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSLTSHW
        +W     A +  +W ERNARIF D+ +++    +S  FLA  W+     F    L+ +   W
Subjt:  IWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSLTSHW

A5BRJ2 Reverse transcriptase domain-containing protein7.4e-4932.47Show/hide
Query:  MYRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRA------------
        + R FLW G  E K  HL++W  V  P I GGLGI  I  +N +LL KW+WRF  E  +LW  VI S YG       W+ + + + +             
Subjt:  MYRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRA------------

Query:  ---------EDIWLGSSSLKVQYPSLYHLALKKEGTIAE-FWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIK-NEEDTWFWRLGNSGIFSKR--
                 ED+W G  +LK QYP L+ + + K   I+    +    SWN + RRNL + EI +   L H+L   ++  +  D   W L +SG+F+ +  
Subjt:  ---------EDIWLGSSSLKVQYPSLYHLALKKEGTIAE-FWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIK-NEEDTWFWRLGNSGIFSKR--

Query:  -TLLQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFAR
         T L QM  SS    T     +WK  +P KVK F+W ++H  ++T D++Q R P   +SP  C +C +  E+  HLF  C      W  L Q     +  
Subjt:  -TLLQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFAR

Query:  PGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSLTSHW
        P  I  ++     G    K   ++W N   A +W +W ERNARIF D+ ++  +  +S  FLA  W+     F    L+ L   W
Subjt:  PGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFIESTTFLALFWSRHIPTFCNYSLSSLTSHW

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.0e-1524.22Show/hide
Query:  RLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTS-WEISLLTLPRAEDIWLGSSSLKVQ
        R FLW    EKK  HL+KWS V SP  EGGLG+      N +L++K  WR   E ++LW +V+  KY V +I  S W   L+        W   +     
Subjt:  RLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTS-WEISLLTLPRAEDIWLGSSSLKVQ

Query:  YPSLYHLALKKEGTIAEFWNP--IDGSWNLHLRRNLLEAEIT--------------EWAYLSHNLTNFS-----------IKNEEDTWFWRLGNSGIFSK
          S     +  +G    FW    + G   L L       +                ++A +    TN +           +    D   W+    G FS 
Subjt:  YPSLYHLALKKEGTIAEFWNP--IDGSWNLHLRRNLLEAEIT--------------EWAYLSHNLTNFS-----------IKNEEDTWFWRLGNSGIFSK

Query:  RTLLQQMASSS--QNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYW
        R+  + +      + +    +  LWK  +P++VK F+W + +  + T +   RR+     +   C +C    E+  H+   C      W
Subjt:  RTLLQQMASSS--QNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYW

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein6.2e-1623.94Show/hide
Query:  FLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKY-----------------GVAKIHTSWEI----SLL
        F WR   E KG H   W  +     EGG+G  DI   N++LL K +WR  S  ++L   V  S+Y                     IH S EI    +  
Subjt:  FLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKY-----------------GVAKIHTSWEI----SLL

Query:  TLPRAEDI------WL----GSSSLKVQ-YPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITE---------------------WAYLSHNLT
         +   EDI      WL     S++L++Q  P   + ++     +++  +     W    R++++E    E                     W Y S    
Subjt:  TLPRAEDI------WL----GSSSLKVQ-YPSLYHLALKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITE---------------------WAYLSHNLT

Query:  NFSIKNEEDTWFWRLGNSGIFSKRTLLQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLF
        ++++K    + +W L  + I +KR+  Q+++  S N    +Y ++WK     K++ F+W+     +     +  R+         CI C    ET  HL 
Subjt:  NFSIKNEEDTWFWRLGNSGIFSKRTLLQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTTDIIQRRNPGSFLSPGCCIMCFKANETQAHLF

Query:  SSCKYASAYW--SYLQQAFGWQFARPGDIHTLISFAI-LGHP-FRKDKKLI-WLNFLYAFLWNLWLERNARIFPDR
          C +A   W  S +    G ++A    ++    F +  G+P + K  +L+ WL      LW LW  RN  +F  R
Subjt:  SSCKYASAYW--SYLQQAFGWQFARPGDIHTLISFAI-LGHP-FRKDKKLI-WLNFLYAFLWNLWLERNARIFPDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCGATTATTTCTTTGGCGAGGAGGCATAGAGAAAAAAGGTTGTCACCTGCTTAAATGGTCCATTGTTCAATCCCCTGTTATTGAAGGAGGTCTAGGCATCTTCGA
TATTCACAAGAAGAATGTATCCCTCTTAGCCAAATGGATTTGGAGATTCTACTCCGAACTTGATGCTCTATGGAGAATTGTCATTGCCTCCAAATACGGAGTGGCAAAAA
TCCACACAAGTTGGGAGATCTCACTCTTAACACTTCCAAGGGCCGAGGATATATGGCTTGGCTCTTCATCCCTTAAGGTCCAGTATCCATCTTTGTATCACTTGGCTCTA
AAAAAGGAGGGTACTATAGCAGAATTTTGGAACCCGATTGATGGATCTTGGAATCTTCATTTGAGGAGGAATCTTTTAGAAGCTGAGATTACAGAATGGGCTTATTTATC
ACACAATCTCACCAACTTCTCCATAAAAAATGAAGAAGATACATGGTTTTGGCGCCTTGGAAATTCAGGTATTTTCTCCAAAAGAACTCTCTTGCAGCAGATGGCCTCCT
CATCTCAGAATAGCAGTACAGATCTTTATGGCCAGTTATGGAAGGGATCTATGCCGAAAAAAGTCAAATTCTTCGTTTGGGAGATTAGTCATGCTTGTATCGATACAACA
GATATTATTCAAAGAAGGAATCCTGGCTCTTTTCTCTCCCCTGGCTGCTGCATCATGTGCTTTAAAGCTAACGAGACCCAAGCCCACCTTTTCAGTAGCTGTAAATATGC
CTCTGCTTACTGGTCCTACCTTCAACAAGCATTTGGATGGCAATTTGCCCGGCCTGGCGATATCCACACTCTTATATCTTTTGCTATTCTTGGTCACCCCTTTAGGAAGG
ATAAAAAGCTCATTTGGTTGAATTTTTTGTATGCTTTTTTATGGAACCTGTGGCTAGAAAGGAATGCTAGGATCTTCCCTGATAGGAACCAAAGCACATATTCCTTTATT
GAATCTACTACTTTCCTTGCTCTTTTTTGGAGTAGACACATCCCCACATTTTGTAATTACTCCCTCTCATCACTCACATCCCATTGGAGATATCTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATCGATTATTTCTTTGGCGAGGAGGCATAGAGAAAAAAGGTTGTCACCTGCTTAAATGGTCCATTGTTCAATCCCCTGTTATTGAAGGAGGTCTAGGCATCTTCGA
TATTCACAAGAAGAATGTATCCCTCTTAGCCAAATGGATTTGGAGATTCTACTCCGAACTTGATGCTCTATGGAGAATTGTCATTGCCTCCAAATACGGAGTGGCAAAAA
TCCACACAAGTTGGGAGATCTCACTCTTAACACTTCCAAGGGCCGAGGATATATGGCTTGGCTCTTCATCCCTTAAGGTCCAGTATCCATCTTTGTATCACTTGGCTCTA
AAAAAGGAGGGTACTATAGCAGAATTTTGGAACCCGATTGATGGATCTTGGAATCTTCATTTGAGGAGGAATCTTTTAGAAGCTGAGATTACAGAATGGGCTTATTTATC
ACACAATCTCACCAACTTCTCCATAAAAAATGAAGAAGATACATGGTTTTGGCGCCTTGGAAATTCAGGTATTTTCTCCAAAAGAACTCTCTTGCAGCAGATGGCCTCCT
CATCTCAGAATAGCAGTACAGATCTTTATGGCCAGTTATGGAAGGGATCTATGCCGAAAAAAGTCAAATTCTTCGTTTGGGAGATTAGTCATGCTTGTATCGATACAACA
GATATTATTCAAAGAAGGAATCCTGGCTCTTTTCTCTCCCCTGGCTGCTGCATCATGTGCTTTAAAGCTAACGAGACCCAAGCCCACCTTTTCAGTAGCTGTAAATATGC
CTCTGCTTACTGGTCCTACCTTCAACAAGCATTTGGATGGCAATTTGCCCGGCCTGGCGATATCCACACTCTTATATCTTTTGCTATTCTTGGTCACCCCTTTAGGAAGG
ATAAAAAGCTCATTTGGTTGAATTTTTTGTATGCTTTTTTATGGAACCTGTGGCTAGAAAGGAATGCTAGGATCTTCCCTGATAGGAACCAAAGCACATATTCCTTTATT
GAATCTACTACTTTCCTTGCTCTTTTTTGGAGTAGACACATCCCCACATTTTGTAATTACTCCCTCTCATCACTCACATCCCATTGGAGATATCTTTTGTAA
Protein sequenceShow/hide protein sequence
MYRLFLWRGGIEKKGCHLLKWSIVQSPVIEGGLGIFDIHKKNVSLLAKWIWRFYSELDALWRIVIASKYGVAKIHTSWEISLLTLPRAEDIWLGSSSLKVQYPSLYHLAL
KKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDTWFWRLGNSGIFSKRTLLQQMASSSQNSSTDLYGQLWKGSMPKKVKFFVWEISHACIDTT
DIIQRRNPGSFLSPGCCIMCFKANETQAHLFSSCKYASAYWSYLQQAFGWQFARPGDIHTLISFAILGHPFRKDKKLIWLNFLYAFLWNLWLERNARIFPDRNQSTYSFI
ESTTFLALFWSRHIPTFCNYSLSSLTSHWRYLL