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Lag0036104 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036104
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr3:39052830..39054922
RNA-Seq ExpressionLag0036104
SyntenyLag0036104
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046064.1 hypothetical protein E6C27_scaffold1096G00160 [Cucumis melo var. makuwa]5.1e-4655.36Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVLLIQKMMHHVDPISNEEYKVIDGDNHFVVNVD
        G+FTAYE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+DG      L   L+ +     V+ +S  E++V+DG  +F+V ++
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVLLIQKMMHHVDPISNEEYKVIDGDNHFVVNVD

Query:  SRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
          SCSC FWD+EEIPCAHA  V+  L L  YAFVS YY+++ L +TY G VRP GN  +WS V V+ N
Subjt:  SRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

KAA0046918.1 uncharacterized protein E6C27_scaffold230G00860 [Cucumis melo var. makuwa]4.1e-4347.5Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL---------------------------LIQK
        G+FT YE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+D     S L  +                            LI+K
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL---------------------------LIQK

Query:  MMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
        ++       V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEIPCA A  V+  LNL  YAFVS YY+++ L +TY G VRP GN  +WS V V+ N
Subjt:  MMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

KAA0062637.1 uncharacterized protein E6C27_scaffold79G001490 [Cucumis melo var. makuwa]2.4e-3532.88Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL-------------------------------
        G+FTAYE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+DG+++I PL   +                               
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL-------------------------------

Query:  -------------------------------------------------------------------------------------------LIQKMMHH-
                                                                                                   LI+K++   
Subjt:  -------------------------------------------------------------------------------------------LIQKMMHH-

Query:  ----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
            V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEI CAHA  V+  LNL  YAFVS YY+++ L +TY G VR  GN  +WS V V+ N
Subjt:  ----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]3.6e-3938.76Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEI--------------------------------------
        G+FTAYE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+D   E+                                      
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEI--------------------------------------

Query:  -----------------------------------------SPLPLVL------LIQKMMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWD
                                                 S L  VL      LI+K++       V+P+S  E++V+DG  +F+V ++  SCSC FWD
Subjt:  -----------------------------------------SPLPLVL------LIQKMMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWD

Query:  VEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
        +EEIPCAHA  V+  LNL  YAFVS YY+++ L +TY G VRP GN  +WS V V+ N
Subjt:  VEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]7.0e-4334.66Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL-------------------------------
        GTFTAYE D DGHFKYC++ IGSSIEGWK CRPNI VDGTFLKCKY GTLL AST+DG+NE  PL   +                               
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL-------------------------------

Query:  ------------------------------------LIQKMMH---------------------------------------------------------
                                            LI K+ +                                                         
Subjt:  ------------------------------------LIQKMMH---------------------------------------------------------

Query:  ------------------------------------------------------------HVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPC
                                                                     VD I+NEEYKV+DGDNH+VVNV S+SCSC FWD+EEIPC
Subjt:  ------------------------------------------------------------HVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPC

Query:  AHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
        AHACAVL  LNL SYAFVSDYYFS+   STYK S+ P GN  +WSSV+VD N
Subjt:  AHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

TrEMBL top hitse value%identityAlignment
A0A5A7TSM8 SWIM-type domain-containing protein2.5e-4655.36Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVLLIQKMMHHVDPISNEEYKVIDGDNHFVVNVD
        G+FTAYE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+DG      L   L+ +     V+ +S  E++V+DG  +F+V ++
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVLLIQKMMHHVDPISNEEYKVIDGDNHFVVNVD

Query:  SRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
          SCSC FWD+EEIPCAHA  V+  L L  YAFVS YY+++ L +TY G VRP GN  +WS V V+ N
Subjt:  SRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

A0A5A7TVL2 ZnF_PMZ domain-containing protein2.0e-4347.5Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL---------------------------LIQK
        G+FT YE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+D     S L  +                            LI+K
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL---------------------------LIQK

Query:  MMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
        ++       V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEIPCA A  V+  LNL  YAFVS YY+++ L +TY G VRP GN  +WS V V+ N
Subjt:  MMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

A0A5A7V6N4 SWIM-type domain-containing protein1.2e-3532.88Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL-------------------------------
        G+FTAYE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+DG+++I PL   +                               
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVL-------------------------------

Query:  -------------------------------------------------------------------------------------------LIQKMMHH-
                                                                                                   LI+K++   
Subjt:  -------------------------------------------------------------------------------------------LIQKMMHH-

Query:  ----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
            V+P+S  E++V+DG  +F+V ++  SCSC FWD+EEI CAHA  V+  LNL  YAFVS YY+++ L +TY G VR  GN  +WS V V+ N
Subjt:  ----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

A0A5A7V9D5 SWIM-type domain-containing protein8.3e-3444.68Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTL--------------LAASTLDGSNEISPLPLVLLIQKMMHH---VDPISN
        GT TA E D+ GHFK+CF+  G+SIEGWK CRP ISVDGTFLK  Y+ ++               AAST+  S+  S    +L ++        VDPIS 
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTL--------------LAASTLDGSNEISPLPLVLLIQKMMHH---VDPISN

Query:  EEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVNYYL
         EY+V DG+  F+V ++   CSC+ WD+EEIPCAHA AVL  LNL +Y++VS +Y+   L +TY G  +P G+  +W  V+  +  YL
Subjt:  EEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVNYYL

A0A5D3BD68 SWIM-type domain-containing protein1.7e-3938.76Show/hide
Query:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEI--------------------------------------
        G+FTAYE D +GHFKYCF+ I SSIEGW+ CRPNI+VDGTFLKCKY GTLL A+T+D   E+                                      
Subjt:  GTFTAYEADEDGHFKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEI--------------------------------------

Query:  -----------------------------------------SPLPLVL------LIQKMMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWD
                                                 S L  VL      LI+K++       V+P+S  E++V+DG  +F+V ++  SCSC FWD
Subjt:  -----------------------------------------SPLPLVL------LIQKMMHH-----VDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWD

Query:  VEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN
        +EEIPCAHA  V+  LNL  YAFVS YY+++ L +TY G VRP GN  +WS V V+ N
Subjt:  VEEIPCAHACAVLHGLNLVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase3.0e-0442.31Show/hide
Query:  FKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPL
        F+  F     SIEG++ CRP I VD   L  KY   L+ AS +D +N+  PL
Subjt:  FKYCFLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTTACCCACGAATTTTCCTCGGCCGAAAATGCAAGGGATCGAGAGGAGAAAGAGAGGCAGCGGCGACGCGTTGGCTGGCTGACGAACGGCGGCTGGGCTCGCGC
CTTGCACGAGGAAGAGAGGGAGAGAGAAGCGCGCGGAGAGGAGAAGAGGGAAAACCCACAGCGGCGGCTGAGCGTGCGGCGGCTGGATGGCGAAACGAGAGCGGCTGGGT
GTGCGGCGCGGCTGAGCGAACGGCGGCGGTTAGCTGGCTGCAAAACGCGAGGGGAGGGAGGTACATTCACAGCCTATGAAGCTGATGAAGATGGGCATTTTAAGTATTGC
TTTCTGGTTATTGGTTCATCAATTGAGGGTTGGAAGCAATGTAGGCCAAATATTTCAGTTGATGGAACATTCCTGAAATGTAAATATGTTGGAACTCTTTTGGCAGCCTC
AACACTTGACGGTAGCAATGAGATTTCCCCCTTGCCTTTAGTATTGTTGATTCAGAAAATGATGCATCATGTTGATCCTATTAGCAATGAAGAATATAAAGTAATTGATG
GAGATAATCATTTTGTGGTAAACGTGGATTCTAGATCATGCAGTTGTCAGTTTTGGGATGTTGAGGAAATTCCATGTGCTCATGCATGTGCAGTTCTTCATGGACTTAAT
TTGGTTTCTTATGCTTTTGTGTCTGACTATTATTTTTCAAGTAGATTGCTATCTACTTATAAAGGTTCAGTCCGTCCAGCGGGCAATGGTTTGAATTGGAGCTCTGTAAA
TGTTGATGTGAATTATTACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACTTACCCACGAATTTTCCTCGGCCGAAAATGCAAGGGATCGAGAGGAGAAAGAGAGGCAGCGGCGACGCGTTGGCTGGCTGACGAACGGCGGCTGGGCTCGCGC
CTTGCACGAGGAAGAGAGGGAGAGAGAAGCGCGCGGAGAGGAGAAGAGGGAAAACCCACAGCGGCGGCTGAGCGTGCGGCGGCTGGATGGCGAAACGAGAGCGGCTGGGT
GTGCGGCGCGGCTGAGCGAACGGCGGCGGTTAGCTGGCTGCAAAACGCGAGGGGAGGGAGGTACATTCACAGCCTATGAAGCTGATGAAGATGGGCATTTTAAGTATTGC
TTTCTGGTTATTGGTTCATCAATTGAGGGTTGGAAGCAATGTAGGCCAAATATTTCAGTTGATGGAACATTCCTGAAATGTAAATATGTTGGAACTCTTTTGGCAGCCTC
AACACTTGACGGTAGCAATGAGATTTCCCCCTTGCCTTTAGTATTGTTGATTCAGAAAATGATGCATCATGTTGATCCTATTAGCAATGAAGAATATAAAGTAATTGATG
GAGATAATCATTTTGTGGTAAACGTGGATTCTAGATCATGCAGTTGTCAGTTTTGGGATGTTGAGGAAATTCCATGTGCTCATGCATGTGCAGTTCTTCATGGACTTAAT
TTGGTTTCTTATGCTTTTGTGTCTGACTATTATTTTTCAAGTAGATTGCTATCTACTTATAAAGGTTCAGTCCGTCCAGCGGGCAATGGTTTGAATTGGAGCTCTGTAAA
TGTTGATGTGAATTATTACCTCTAA
Protein sequenceShow/hide protein sequence
MRLTHEFSSAENARDREEKERQRRRVGWLTNGGWARALHEEEREREARGEEKRENPQRRLSVRRLDGETRAAGCAARLSERRRLAGCKTRGEGGTFTAYEADEDGHFKYC
FLVIGSSIEGWKQCRPNISVDGTFLKCKYVGTLLAASTLDGSNEISPLPLVLLIQKMMHHVDPISNEEYKVIDGDNHFVVNVDSRSCSCQFWDVEEIPCAHACAVLHGLN
LVSYAFVSDYYFSSRLLSTYKGSVRPAGNGLNWSSVNVDVNYYL