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Lag0036111 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036111
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:39193517..39194705
RNA-Seq ExpressionLag0036111
SyntenyLag0036111
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG46618.1 hypothetical protein EZV62_027882 [Acer yangbiense]2.2e-1728.5Show/hide
Query:  AERAKVVAIEIEDEDLEEAT--------EDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLM
        A   K ++I+ ED D+ + T        ED+   +  ++L  K +N E F++ + ++W+  G V ++  G NTF   F N ++++R+ + GPW+++KSL+
Subjt:  AERAKVVAIEIEDEDLEEAT--------EDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLM

Query:  VIEEAQGTSRISRIEFRIGSKAEETWVKV-----------------------------------------TYERLLEFCYGCGMVGHVQQECEETHQYTD
        V+E+++GT  IS++ F   SKA E WV++                                          YERL EFCY CG +GH + EC +     +
Subjt:  VIEEAQGTSRISRIEFRIGSKAEETWVKV-----------------------------------------TYERLLEFCYGCGMVGHVQQECEETHQYTD

Query:  G----ENLYGEWMR
                +G WMR
Subjt:  G----ENLYGEWMR

TXG51459.1 hypothetical protein EZV62_023983 [Acer yangbiense]3.2e-1630.22Show/hide
Query:  EIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGT---------
        E+ +ED  +   ++   +  +IL+ K +N E FK  + ++W+  G V +++ G N F   FNN  E++RI + GPW ++KSL+V+E+ +G          
Subjt:  EIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGT---------

Query:  ---SRISRIEFRIG-SKAEETW-------------VKVTYERLLEFCYGCGMVGHVQQECEETH---QYTDGENL-YGEWMR
            +  +++ +I  SK  + W             V + YERL +FCY CG +GH  + C +     +   GE+  YG WMR
Subjt:  ---SRISRIEFRIG-SKAEETW-------------VKVTYERLLEFCYGCGMVGHVQQECEETH---QYTDGENL-YGEWMR

TXG57139.1 hypothetical protein EZV62_018452 [Acer yangbiense]2.5e-1629.61Show/hide
Query:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV
        EKL I   + A     E+ +ED  E   ++   +  +I++ K  N E FK  + K+W++ GRV +++ G N F   FNN  E++RI   GPW ++ SL+ 
Subjt:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV

Query:  IEEAQGTSRISRIEFR---------------IGSKAEE------TWVK-------------VTYERLLEFCYGCGMVGHVQQECEETH----QYTDGENL
        +E+ +G   IS ++F                +  KA +       W+K             + YERL EFCY CG +GH  ++C +            + 
Subjt:  IEEAQGTSRISRIEFR---------------IGSKAEE------TWVK-------------VTYERLLEFCYGCGMVGHVQQECEETH----QYTDGENL

Query:  YGEWMR
        YG WMR
Subjt:  YGEWMR

TXG70048.1 hypothetical protein EZV62_004983 [Acer yangbiense]2.2e-1732.93Show/hide
Query:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV
        E L +   +  + V +E+ +E   +  ED+   +  ++L+ K +N E FK  + +IWN  G+V V+  G N F   FNN  E++++    PW++  SL+V
Subjt:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV

Query:  IEEAQGTSRISRIEFR--------------IGSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC
        +E+  G   IS+++F               IG   E T V + YERL EFC+ CG +GH  +EC
Subjt:  IEEAQGTSRISRIEFR--------------IGSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC

TXG73661.1 hypothetical protein EZV62_002240 [Acer yangbiense]1.9e-1630.68Show/hide
Query:  VVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGTSRISR
        V   E+ +E   +  ED++  +  ++L  K +N + FK  + +IWN  G V ++  G N F   F N  +++++   GPW++  SL+V+E+  GT +  R
Subjt:  VVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGTSRISR

Query:  IEFRI--------------GSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC--EETHQ--YTDGENLYGEWMRET
        +  RI              G   E T V + YERL EFC+ CG +GH  + C  EE  +       N +G W++ T
Subjt:  IEFRI--------------GSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC--EETHQ--YTDGENLYGEWMRET

TrEMBL top hitse value%identityAlignment
A0A5C7GPQ7 CCHC-type domain-containing protein1.1e-1728.5Show/hide
Query:  AERAKVVAIEIEDEDLEEAT--------EDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLM
        A   K ++I+ ED D+ + T        ED+   +  ++L  K +N E F++ + ++W+  G V ++  G NTF   F N ++++R+ + GPW+++KSL+
Subjt:  AERAKVVAIEIEDEDLEEAT--------EDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLM

Query:  VIEEAQGTSRISRIEFRIGSKAEETWVKV-----------------------------------------TYERLLEFCYGCGMVGHVQQECEETHQYTD
        V+E+++GT  IS++ F   SKA E WV++                                          YERL EFCY CG +GH + EC +     +
Subjt:  VIEEAQGTSRISRIEFRIGSKAEETWVKV-----------------------------------------TYERLLEFCYGCGMVGHVQQECEETHQYTD

Query:  G----ENLYGEWMR
                +G WMR
Subjt:  G----ENLYGEWMR

A0A5C7H421 CCHC-type domain-containing protein1.6e-1630.22Show/hide
Query:  EIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGT---------
        E+ +ED  +   ++   +  +IL+ K +N E FK  + ++W+  G V +++ G N F   FNN  E++RI + GPW ++KSL+V+E+ +G          
Subjt:  EIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGT---------

Query:  ---SRISRIEFRIG-SKAEETW-------------VKVTYERLLEFCYGCGMVGHVQQECEETH---QYTDGENL-YGEWMR
            +  +++ +I  SK  + W             V + YERL +FCY CG +GH  + C +     +   GE+  YG WMR
Subjt:  ---SRISRIEFRIG-SKAEETW-------------VKVTYERLLEFCYGCGMVGHVQQECEETH---QYTDGENL-YGEWMR

A0A5C7HK10 CCHC-type domain-containing protein1.2e-1629.61Show/hide
Query:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV
        EKL I   + A     E+ +ED  E   ++   +  +I++ K  N E FK  + K+W++ GRV +++ G N F   FNN  E++RI   GPW ++ SL+ 
Subjt:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV

Query:  IEEAQGTSRISRIEFR---------------IGSKAEE------TWVK-------------VTYERLLEFCYGCGMVGHVQQECEETH----QYTDGENL
        +E+ +G   IS ++F                +  KA +       W+K             + YERL EFCY CG +GH  ++C +            + 
Subjt:  IEEAQGTSRISRIEFR---------------IGSKAEE------TWVK-------------VTYERLLEFCYGCGMVGHVQQECEETH----QYTDGENL

Query:  YGEWMR
        YG WMR
Subjt:  YGEWMR

A0A5C7ILK5 CCHC-type domain-containing protein1.1e-1732.93Show/hide
Query:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV
        E L +   +  + V +E+ +E   +  ED+   +  ++L+ K +N E FK  + +IWN  G+V V+  G N F   FNN  E++++    PW++  SL+V
Subjt:  EKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMV

Query:  IEEAQGTSRISRIEFR--------------IGSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC
        +E+  G   IS+++F               IG   E T V + YERL EFC+ CG +GH  +EC
Subjt:  IEEAQGTSRISRIEFR--------------IGSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC

A0A5C7IWJ4 CCHC-type domain-containing protein9.1e-1730.68Show/hide
Query:  VVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGTSRISR
        V   E+ +E   +  ED++  +  ++L  K +N + FK  + +IWN  G V ++  G N F   F N  +++++   GPW++  SL+V+E+  GT +  R
Subjt:  VVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQGTSRISR

Query:  IEFRI--------------GSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC--EETHQ--YTDGENLYGEWMRET
        +  RI              G   E T V + YERL EFC+ CG +GH  + C  EE  +       N +G W++ T
Subjt:  IEFRI--------------GSKAEETWVKVTYERLLEFCYGCGMVGHVQQEC--EETHQ--YTDGENLYGEWMRET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGCTGGAAAAACTAAAAATCACTTCTGCAGAAAGAGCCAAAGTGGTGGCTATTGAAATTGAAGATGAAGATCTTGAGGAAGCTACAGAGGACCTCCAAGGAAG
GATCTTTTGCAGAATCCTAACTCCAAAACTCATCAACCCTGAAGTTTTCAAAACATTTATGCCAAAAATTTGGAACAAAGAAGGACGAGTGAGAGTAAAAGCAAAAGGAA
GGAACACCTTTTTTTGCCAGTTCAACAATCACCATGAAAAGGATAGAATCAAGAGAGGAGGACCATGGAACTACAACAAATCACTAATGGTCATAGAAGAGGCACAGGGA
ACTAGCAGAATATCTCGAATAGAATTCAGAATCGGTTCAAAAGCAGAGGAAACGTGGGTGAAAGTGACATACGAACGATTACTAGAATTTTGTTATGGTTGTGGAATGGT
TGGGCATGTGCAACAAGAATGTGAGGAGACACATCAGTATACAGATGGTGAAAACTTGTATGGTGAATGGATGAGAGAAACGCCAATCATAGGGGGCCTGCCAAAGTATA
AACAACAGGAGAACAGACACAATTTTGGTTGGGGAAGAGGCAGAGGAAGAAGAGCGATGTCCAGAGGTTACTTCGATGGTCGGAGAAAAGGAAGAAGCAACGAAGAATCC
TGGAAAAGGAAAGATCAAAGGACCGATCACCACGATTTTTTCGACGAACGACGATCGGAAAAAACTAGTGAGGAGAAAAGGTTCCCGGAGCCGGTGACCGAACAACAATC
CCAAGCACCTCCAACGGCTAGTGGAGTGTCAGAAGAAATGAAAAATAAAAAAGGAAAAGCTATAGCTGAAACAGAAATTCTAGGAAAAGACAGGGAGGACAGCAGTGGAA
AAGGACAAAAGGTAATGATGATAAGGAAAAAGGAAGCTGGAATAATCATCAAGGAAGTAAAAAGTTTAGATTTTCAAAAGTGGACCAGTCAGAACCCCAAAAAAATTACA
GCCCAGGCCCAAGACTCCACAAAAACACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGCTGGAAAAACTAAAAATCACTTCTGCAGAAAGAGCCAAAGTGGTGGCTATTGAAATTGAAGATGAAGATCTTGAGGAAGCTACAGAGGACCTCCAAGGAAG
GATCTTTTGCAGAATCCTAACTCCAAAACTCATCAACCCTGAAGTTTTCAAAACATTTATGCCAAAAATTTGGAACAAAGAAGGACGAGTGAGAGTAAAAGCAAAAGGAA
GGAACACCTTTTTTTGCCAGTTCAACAATCACCATGAAAAGGATAGAATCAAGAGAGGAGGACCATGGAACTACAACAAATCACTAATGGTCATAGAAGAGGCACAGGGA
ACTAGCAGAATATCTCGAATAGAATTCAGAATCGGTTCAAAAGCAGAGGAAACGTGGGTGAAAGTGACATACGAACGATTACTAGAATTTTGTTATGGTTGTGGAATGGT
TGGGCATGTGCAACAAGAATGTGAGGAGACACATCAGTATACAGATGGTGAAAACTTGTATGGTGAATGGATGAGAGAAACGCCAATCATAGGGGGCCTGCCAAAGTATA
AACAACAGGAGAACAGACACAATTTTGGTTGGGGAAGAGGCAGAGGAAGAAGAGCGATGTCCAGAGGTTACTTCGATGGTCGGAGAAAAGGAAGAAGCAACGAAGAATCC
TGGAAAAGGAAAGATCAAAGGACCGATCACCACGATTTTTTCGACGAACGACGATCGGAAAAAACTAGTGAGGAGAAAAGGTTCCCGGAGCCGGTGACCGAACAACAATC
CCAAGCACCTCCAACGGCTAGTGGAGTGTCAGAAGAAATGAAAAATAAAAAAGGAAAAGCTATAGCTGAAACAGAAATTCTAGGAAAAGACAGGGAGGACAGCAGTGGAA
AAGGACAAAAGGTAATGATGATAAGGAAAAAGGAAGCTGGAATAATCATCAAGGAAGTAAAAAGTTTAGATTTTCAAAAGTGGACCAGTCAGAACCCCAAAAAAATTACA
GCCCAGGCCCAAGACTCCACAAAAACACATTAA
Protein sequenceShow/hide protein sequence
MEELEKLKITSAERAKVVAIEIEDEDLEEATEDLQGRIFCRILTPKLINPEVFKTFMPKIWNKEGRVRVKAKGRNTFFCQFNNHHEKDRIKRGGPWNYNKSLMVIEEAQG
TSRISRIEFRIGSKAEETWVKVTYERLLEFCYGCGMVGHVQQECEETHQYTDGENLYGEWMRETPIIGGLPKYKQQENRHNFGWGRGRGRRAMSRGYFDGRRKGRSNEES
WKRKDQRTDHHDFFDERRSEKTSEEKRFPEPVTEQQSQAPPTASGVSEEMKNKKGKAIAETEILGKDREDSSGKGQKVMMIRKKEAGIIIKEVKSLDFQKWTSQNPKKIT
AQAQDSTKTH