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Lag0036113 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036113
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:39247781..39248344
RNA-Seq ExpressionLag0036113
SyntenyLag0036113
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]1.8e-2236.81Show/hide
Query:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEKF
        L D W   +LT +EE + V  +  +VD        CL+GKL+  RP+  EVMRN     WK+  GLQV  +G+ LFIF+F +++++ R+++Q PW F K 
Subjt:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEKF

Query:  LLVL--------VFPIR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
        LLVL        V  I+               G M E +G V+    G  EE+D     + WG  LR R RLN+ +PL+RG+
Subjt:  LLVL--------VFPIR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

OMP10859.1 hypothetical protein COLO4_04212 [Corchorus olitorius]2.2e-2337.7Show/hide
Query:  SLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK
        +L D W + SLT +EE   VV  + + +  D   + CL+GKL+  R +  EVMRN     WK+  GLQ+  +G KLFIF+F  E+++ R+F+Q PW F K
Subjt:  SLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK

Query:  FLLVL----VFP----IR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
         LLVL     FP    +R               G M E +G V+    G+ EEVD     + W   LR+RVR+ +++PL+RG+
Subjt:  FLLVL----VFP----IR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.8e-2331.91Show/hide
Query:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGP
        M  S+L+++W    LTS+E+++ V  +   ++      E+ L+ KL+  R I   V++N  + AWK++     VD +G  +F+F F    DR RI R GP
Subjt:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGP

Query:  WLFEKFLLVLVFPI---------------------------RGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
        W F++ L+++  P+                             +MA RLGN +G+FE+V++      WGS LR+RVR ++ +PL RGI
Subjt:  WLFEKFLLVLVFPI---------------------------RGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]8.0e-2637.77Show/hide
Query:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPW
        MD  +L+ DW +  LTS+E+E+ +  + D V  A+      L+GKL+  R I A+V+      AWK+E+ L V+ +GK LF+F F  E D  R+ + GPW
Subjt:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPW

Query:  LFEKFLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVD-NRNGFLFWGSSLRIRVRLNLNRPLQRGI
         F+K L+VL  P                           +  +MA RLGN +G F +VD N  GF  WG+SLRIRV +++ +PL+RGI
Subjt:  LFEKFLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVD-NRNGFLFWGSSLRIRVRLNLNRPLQRGI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.2e-2336.07Show/hide
Query:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK
        L+++W    LTS+EEE  +  +           E  L+GKL   RPI   VM+N  R+AWK+E N  +V  LG  LF+F F   +DR +I++ GPW F++
Subjt:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK

Query:  FLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
         L+++  P                           I   MA RLGN +G FEE D  +    WGS+LR+RV L++++PL+RGI
Subjt:  FLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase8.9e-2336.81Show/hide
Query:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEKF
        L D W   +LT +EE + V  +  +VD        CL+GKL+  RP+  EVMRN     WK+  GLQV  +G+ LFIF+F +++++ R+++Q PW F K 
Subjt:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEKF

Query:  LLVL--------VFPIR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
        LLVL        V  I+               G M E +G V+    G  EE+D     + WG  LR R RLN+ +PL+RG+
Subjt:  LLVL--------VFPIR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

A0A1R3KUZ6 DUF4283 domain-containing protein1.1e-2337.7Show/hide
Query:  SLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK
        +L D W + SLT +EE   VV  + + +  D   + CL+GKL+  R +  EVMRN     WK+  GLQ+  +G KLFIF+F  E+++ R+F+Q PW F K
Subjt:  SLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK

Query:  FLLVL----VFP----IR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
         LLVL     FP    +R               G M E +G V+    G+ EEVD     + W   LR+RVR+ +++PL+RG+
Subjt:  FLLVL----VFP----IR---------------GSMAERLGNVV----GIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

A0A6J1BSZ1 uncharacterized protein LOC1110054812.3e-2331.91Show/hide
Query:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGP
        M  S+L+++W    LTS+E+++ V  +   ++      E+ L+ KL+  R I   V++N  + AWK++     VD +G  +F+F F    DR RI R GP
Subjt:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGP

Query:  WLFEKFLLVLVFPI---------------------------RGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
        W F++ L+++  P+                             +MA RLGN +G+FE+V++      WGS LR+RVR ++ +PL RGI
Subjt:  WLFEKFLLVLVFPI---------------------------RGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

A0A6J1DU55 uncharacterized protein LOC1110231353.9e-2637.77Show/hide
Query:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPW
        MD  +L+ DW +  LTS+E+E+ +  + D V  A+      L+GKL+  R I A+V+      AWK+E+ L V+ +GK LF+F F  E D  R+ + GPW
Subjt:  MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPW

Query:  LFEKFLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVD-NRNGFLFWGSSLRIRVRLNLNRPLQRGI
         F+K L+VL  P                           +  +MA RLGN +G F +VD N  GF  WG+SLRIRV +++ +PL+RGI
Subjt:  LFEKFLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVD-NRNGFLFWGSSLRIRVRLNLNRPLQRGI

A0A6J1DX30 uncharacterized protein LOC1110248741.1e-2336.07Show/hide
Query:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK
        L+++W    LTS+EEE  +  +           E  L+GKL   RPI   VM+N  R+AWK+E N  +V  LG  LF+F F   +DR +I++ GPW F++
Subjt:  LIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIE-NGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEK

Query:  FLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI
         L+++  P                           I   MA RLGN +G FEE D  +    WGS+LR+RV L++++PL+RGI
Subjt:  FLLVLVFP---------------------------IRGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGTCATCCTTGATCGACGATTGGTCTCGATTGAGCCTGACTTCGAAGGAGGAAGAAGTCTATGTGGTTGCGAACAGAGATGTTGTGGACAGAGCTGACCTCTC
CTTTGAGGTTTGTCTGCTTGGTAAATTAATTTGCCATCGCCCTATTGGAGCTGAAGTTATGAGGAACAACTTTCGATCGGCTTGGAAAATCGAGAATGGTTTGCAGGTGG
ATCGACTGGGTAAAAAATTGTTCATTTTCCGTTTTGGGAATGAGGTTGATCGTGTTCGAATATTTCGACAGGGACCATGGCTCTTTGAGAAGTTTCTCCTTGTTTTAGTT
TTTCCGATTCGTGGTAGCATGGCGGAGAGGCTTGGAAATGTCGTGGGCATATTCGAAGAGGTTGACAACAGAAATGGGTTTTTGTTCTGGGGTTCTAGCCTGCGAATCAG
GGTTCGTCTCAACTTGAATCGTCCTCTTCAAAGAGGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGTCATCCTTGATCGACGATTGGTCTCGATTGAGCCTGACTTCGAAGGAGGAAGAAGTCTATGTGGTTGCGAACAGAGATGTTGTGGACAGAGCTGACCTCTC
CTTTGAGGTTTGTCTGCTTGGTAAATTAATTTGCCATCGCCCTATTGGAGCTGAAGTTATGAGGAACAACTTTCGATCGGCTTGGAAAATCGAGAATGGTTTGCAGGTGG
ATCGACTGGGTAAAAAATTGTTCATTTTCCGTTTTGGGAATGAGGTTGATCGTGTTCGAATATTTCGACAGGGACCATGGCTCTTTGAGAAGTTTCTCCTTGTTTTAGTT
TTTCCGATTCGTGGTAGCATGGCGGAGAGGCTTGGAAATGTCGTGGGCATATTCGAAGAGGTTGACAACAGAAATGGGTTTTTGTTCTGGGGTTCTAGCCTGCGAATCAG
GGTTCGTCTCAACTTGAATCGTCCTCTTCAAAGAGGAATTTGA
Protein sequenceShow/hide protein sequence
MDLSSLIDDWSRLSLTSKEEEVYVVANRDVVDRADLSFEVCLLGKLICHRPIGAEVMRNNFRSAWKIENGLQVDRLGKKLFIFRFGNEVDRVRIFRQGPWLFEKFLLVLV
FPIRGSMAERLGNVVGIFEEVDNRNGFLFWGSSLRIRVRLNLNRPLQRGI