; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036129 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036129
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr3:39802854..39803360
RNA-Seq ExpressionLag0036129
SyntenyLag0036129
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]5.1e-0745Show/hide
Query:  PRPPFPGNQFPPQTQFPVPPQNFFSPNPYPTLP---QPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        P PP P +   P +  P P     + +P P +P   QP AVKL ++N+++WK QLLN+V+ANGL  FLDGS   P +FL+
Subjt:  PRPPFPGNQFPPQTQFPVPPQNFFSPNPYPTLP---QPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

RVW43596.1 hypothetical protein CK203_097540 [Vitis vinifera]8.7e-0757.14Show/hide
Query:  YPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        +P++ QP  VKL   N+L+WKNQLLNV++AN L  F+DGS P P +FLN
Subjt:  YPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.7e-0852.86Show/hide
Query:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        PQ   P P    FSPN     YP+L QP  +KL E N  LWKNQLLNV++ANGL  F++G  P+P+KFL+
Subjt:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]4.6e-0851.43Show/hide
Query:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        PQ   P P    FSPN     YP+L QP  +KL E N  LWKNQL+NV++ANGL  F++G  P+P+KFL+
Subjt:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]6.2e-1364.29Show/hide
Query:  QFPPQT-QFPVPPQNFFSPNPYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        QFPP T  F   P N FS NP+PTLPQP  VKL +NNFLLWKNQLLN V+ANGL  +LDG+I  P +FL+
Subjt:  QFPPQT-QFPVPPQNFFSPNPYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE11.3e-0852.86Show/hide
Query:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        PQ   P P    FSPN     YP+L QP  +KL E N  LWKNQLLNV++ANGL  F++G  P+P+KFL+
Subjt:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

A0A438KNU0 Uncharacterized protein2.2e-0851.43Show/hide
Query:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        PQ   P P    FSPN     YP+L QP  +KL E N  LWKNQL+NV++ANGL  F++G  P+P+KFL+
Subjt:  PQTQFPVPPQNFFSPN----PYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

A0A6J1DQX7 uncharacterized protein LOC1110223153.0e-1364.29Show/hide
Query:  QFPPQT-QFPVPPQNFFSPNPYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        QFPP T  F   P N FS NP+PTLPQP  VKL +NNFLLWKNQLLN V+ANGL  +LDG+I  P +FL+
Subjt:  QFPPQT-QFPVPPQNFFSPNPYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

A0A7J0EGI5 Uncharacterized protein2.5e-0745Show/hide
Query:  PRPPFPGNQFPPQTQFPVPPQNFFSPNPYPTLP---QPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        P PP P +   P +  P P     + +P P +P   QP AVKL ++N+++WK QLLN+V+ANGL  FLDGS   P +FL+
Subjt:  PRPPFPGNQFPPQTQFPVPPQNFFSPNPYPTLP---QPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

A0A7J0GPN0 UBX domain-containing protein4.2e-0744.71Show/hide
Query:  PPFPGNQFPPQTQFPVPPQNFFSPNP----------YPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN
        PP P    PP T  P+P  +   PNP           P++ QP AVKL ++N+++WK QLLN+V+ANGL  FLDGS   P +FL+
Subjt:  PPFPGNQFPPQTQFPVPPQNFFSPNP----------YPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTTGAAGAAGGATTTTCATCCTCCTCTTCAGTTTCGATGGACACTACTGTGGTTACTCCGAGCACACCGATTACTTCTCCAATCGTTACACCAATTCAAAATCA
GACTACTACTTATCCTCAAAAAACTCCTCCAATCACTACTACTAGACGTGCCTTCAATCCAAATGGTTTCCCTCAACCCCGATTTCTAAATCCAACTTTTCCCACCACCC
CAATCCCATATCAACAACCCTTTCAGCCTCAGCAATTTTACCCACAACAGTATCCTCGGCCTCCCTTTCCTGGTAATCAATTTCCGCCTCAAACCCAATTTCCAGTTCCT
CCACAAAATTTCTTCTCCCCCAACCCTTACCCTACGCTGCCACAACCTCCTGCTGTCAAGCTCATGGAAAATAATTTCCTCCTGTGGAAGAATCAACTGTTGAACGTAGT
TTTGGCAAACGGGCTCTCTAGTTTTCTCGACGGCTCCATCCCCATGCCTTCTAAGTTCCTCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTTGAAGAAGGATTTTCATCCTCCTCTTCAGTTTCGATGGACACTACTGTGGTTACTCCGAGCACACCGATTACTTCTCCAATCGTTACACCAATTCAAAATCA
GACTACTACTTATCCTCAAAAAACTCCTCCAATCACTACTACTAGACGTGCCTTCAATCCAAATGGTTTCCCTCAACCCCGATTTCTAAATCCAACTTTTCCCACCACCC
CAATCCCATATCAACAACCCTTTCAGCCTCAGCAATTTTACCCACAACAGTATCCTCGGCCTCCCTTTCCTGGTAATCAATTTCCGCCTCAAACCCAATTTCCAGTTCCT
CCACAAAATTTCTTCTCCCCCAACCCTTACCCTACGCTGCCACAACCTCCTGCTGTCAAGCTCATGGAAAATAATTTCCTCCTGTGGAAGAATCAACTGTTGAACGTAGT
TTTGGCAAACGGGCTCTCTAGTTTTCTCGACGGCTCCATCCCCATGCCTTCTAAGTTCCTCAATTAG
Protein sequenceShow/hide protein sequence
MAFEEGFSSSSSVSMDTTVVTPSTPITSPIVTPIQNQTTTYPQKTPPITTTRRAFNPNGFPQPRFLNPTFPTTPIPYQQPFQPQQFYPQQYPRPPFPGNQFPPQTQFPVP
PQNFFSPNPYPTLPQPPAVKLMENNFLLWKNQLLNVVLANGLSSFLDGSIPMPSKFLN