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Lag0036132 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036132
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr3:39967114..39968121
RNA-Seq ExpressionLag0036132
SyntenyLag0036132
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]8.0e-2945.83Show/hide
Query:  STSITTLVVTPISQRPQTPLPPRTNSVPQ-NPQIRRNTP-PSQPFLN--------DTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLE
        ++S T    TP +  P T  P  ++S+P  NPQI   +P P+ P +N        D N+++WK QLLN+V+ANGL  FLDGS   PP+FLD  Q Q N E
Subjt:  STSITTLVVTPISQRPQTPLPPRTNSVPQ-NPQIRRNTP-PSQPFLN--------DTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLE

Query:  FTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT
        F +WQRYNR +M WIY+S +E  + +IV  T+AS+IW  L R Y + + A +  L+T LQ I+K+GLT
Subjt:  FTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]8.0e-2947.56Show/hide
Query:  TPISQRPQTPLPPRTNSVPQ------NPQIRRNTP----PS--QPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTW
        T  S  P  P PP +N +P       NPQI   +P    PS  QP    L+D N+++WK QLLN+V+ANGL  FLDGS   PP+FLD  Q Q N EF +W
Subjt:  TPISQRPQTPLPPRTNSVPQ------NPQIRRNTP----PS--QPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTW

Query:  QRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT
        QRYNR +M WIY+S +E  + +IV  T+AS+IW  L R Y + + A +  L+T LQ I+K+GLT
Subjt:  QRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]5.0e-2343.65Show/hide
Query:  ASSSSSSSGP-LSSPAI-TPSTSITTLVVTPISQRPQTPLPPRTNSVPQNPQIRRNTPPSQPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPP
        AS  SSS+ P   +P I  P T+I  +    I  +P  PLPP    +P  P +      +QPF   L+  N+L+WKNQLLNV++ANGL  F+DGS   PP
Subjt:  ASSSSSSSGP-LSSPAI-TPSTSITTLVVTPISQRPQTPLPPRTNSVPQNPQIRRNTPPSQPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPP

Query:  KFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT
        +F D  +   N E+  WQR+NR IM WIY+S ++  M +IV   +A EIW  L + Y S + A+I  L+ +LQ +RKDGLT
Subjt:  KFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT

RVX14312.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.5e-2242.38Show/hide
Query:  NPQIRRNTPPS--QPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTAS
        N     +T PS  Q F   L+ +N+LLW+ Q+LN+++ANGL   + G I AP +FL +++   N E++ WQR NR +MCWIYSS +E  M +I+ L TAS
Subjt:  NPQIRRNTPPS--QPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTAS

Query:  EIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEIDVFNITDDL
        EIW+ L + + + + ARIM L+ QLQ  +K GL  S +   + + +I D+L
Subjt:  EIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEIDVFNITDDL

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]7.7e-4060Show/hide
Query:  QTPLPPRTNSVPQNPQIRRNTPPSQPFLNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMRE
        Q P P   N  P  PQ      P    LND NFLLWKNQLLN V+ANGL G+LDG+I  PP+FLD +QLQPN  +  W+RYNR +MCWIYSS SEEKM E
Subjt:  QTPLPPRTNSVPQNPQIRRNTPPSQPFLNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMRE

Query:  IVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEI
        +VSL T  +IWS LTR YDS+TTARIM LKT+LQ +RKDG + S    +I
Subjt:  IVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEI

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein2.4e-2343.65Show/hide
Query:  ASSSSSSSGP-LSSPAI-TPSTSITTLVVTPISQRPQTPLPPRTNSVPQNPQIRRNTPPSQPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPP
        AS  SSS+ P   +P I  P T+I  +    I  +P  PLPP    +P  P +      +QPF   L+  N+L+WKNQLLNV++ANGL  F+DGS   PP
Subjt:  ASSSSSSSGP-LSSPAI-TPSTSITTLVVTPISQRPQTPLPPRTNSVPQNPQIRRNTPPSQPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPP

Query:  KFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT
        +F D  +   N E+  WQR+NR IM WIY+S ++  M +IV   +A EIW  L + Y S + A+I  L+ +LQ +RKDGLT
Subjt:  KFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT

A0A6J1DQX7 uncharacterized protein LOC1110223153.7e-4060Show/hide
Query:  QTPLPPRTNSVPQNPQIRRNTPPSQPFLNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMRE
        Q P P   N  P  PQ      P    LND NFLLWKNQLLN V+ANGL G+LDG+I  PP+FLD +QLQPN  +  W+RYNR +MCWIYSS SEEKM E
Subjt:  QTPLPPRTNSVPQNPQIRRNTPPSQPFLNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTWQRYNRFIMCWIYSSPSEEKMRE

Query:  IVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEI
        +VSL T  +IWS LTR YDS+TTARIM LKT+LQ +RKDG + S    +I
Subjt:  IVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEI

A0A7J0EGI5 Uncharacterized protein3.9e-2945.83Show/hide
Query:  STSITTLVVTPISQRPQTPLPPRTNSVPQ-NPQIRRNTP-PSQPFLN--------DTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLE
        ++S T    TP +  P T  P  ++S+P  NPQI   +P P+ P +N        D N+++WK QLLN+V+ANGL  FLDGS   PP+FLD  Q Q N E
Subjt:  STSITTLVVTPISQRPQTPLPPRTNSVPQ-NPQIRRNTP-PSQPFLN--------DTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLE

Query:  FTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT
        F +WQRYNR +M WIY+S +E  + +IV  T+AS+IW  L R Y + + A +  L+T LQ I+K+GLT
Subjt:  FTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT

A0A7J0GPN0 UBX domain-containing protein3.9e-2947.56Show/hide
Query:  TPISQRPQTPLPPRTNSVPQ------NPQIRRNTP----PS--QPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTW
        T  S  P  P PP +N +P       NPQI   +P    PS  QP    L+D N+++WK QLLN+V+ANGL  FLDGS   PP+FLD  Q Q N EF +W
Subjt:  TPISQRPQTPLPPRTNSVPQ------NPQIRRNTP----PS--QPF---LNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLEFTTW

Query:  QRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT
        QRYNR +M WIY+S +E  + +IV  T+AS+IW  L R Y + + A +  L+T LQ I+K+GLT
Subjt:  QRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLT

A0A803NL56 Uncharacterized protein5.4e-2332.65Show/hide
Query:  PLSSPAITPSTSITTLVVTPISQRPQTP-LPPRTNSVPQNPQIRRNTPPSQPFLNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLE
        P+ +P IT + +  T    PIS    +P LPP  +S  Q   ++         L+DTN+L+W+ Q+ N+++ANGL G++DG+++   +F +    Q +  
Subjt:  PLSSPAITPSTSITTLVVTPISQRPQTP-LPPRTNSVPQNPQIRRNTPPSQPFLNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPNLE

Query:  FTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEIDVF-----NITDDLGAKEYV
        FTTW RYN+ +M W+Y+S S+  + +IV  TTA+EIW  L R Y + + AR    +  LQ ++KD L  S+   ++        ++ D + ++E++
Subjt:  FTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEIDVF-----NITDDLGAKEYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATCGAAGCTTCTTCTTCTTCATCATCATCTGGACCTCTTTCTTCGCCGGCCATCACGCCATCTACATCGATTACAACCCTTGTTGTTACTCCCATTTCCCAGCG
TCCTCAGACCCCCCTTCCACCTCGAACAAACTCAGTCCCCCAAAATCCCCAAATTCGACGTAACACACCTCCTTCTCAACCTTTTCTAAATGATACCAACTTCCTGTTGT
GGAAGAATCAATTGCTTAACGTTGTTCTCGCCAATGGTCTTCATGGGTTTCTTGATGGCTCTATTTCGGCGCCTCCAAAGTTTCTCGATGAAAATCAGCTGCAGCCGAAT
CTTGAGTTCACTACATGGCAAAGGTACAATCGTTTCATTATGTGTTGGATATATTCATCACCGTCTGAAGAGAAAATGAGAGAAATTGTGAGTTTGACTACTGCCTCTGA
AATTTGGTCTTTTTTAACTCGTGCTTATGACTCTAGAACCACTGCCCGTATTATGAGTCTTAAAACTCAACTTCAGCGTATTAGGAAAGATGGTCTTACAGAATCAAGCA
TTTCAATGGAAATCGACGTTTTTAACATTACCGATGATTTAGGAGCTAAAGAATACGTTCGAGCCAAGAAAACAGCAAAGGAAGCAAAATTTTGGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTATCGAAGCTTCTTCTTCTTCATCATCATCTGGACCTCTTTCTTCGCCGGCCATCACGCCATCTACATCGATTACAACCCTTGTTGTTACTCCCATTTCCCAGCG
TCCTCAGACCCCCCTTCCACCTCGAACAAACTCAGTCCCCCAAAATCCCCAAATTCGACGTAACACACCTCCTTCTCAACCTTTTCTAAATGATACCAACTTCCTGTTGT
GGAAGAATCAATTGCTTAACGTTGTTCTCGCCAATGGTCTTCATGGGTTTCTTGATGGCTCTATTTCGGCGCCTCCAAAGTTTCTCGATGAAAATCAGCTGCAGCCGAAT
CTTGAGTTCACTACATGGCAAAGGTACAATCGTTTCATTATGTGTTGGATATATTCATCACCGTCTGAAGAGAAAATGAGAGAAATTGTGAGTTTGACTACTGCCTCTGA
AATTTGGTCTTTTTTAACTCGTGCTTATGACTCTAGAACCACTGCCCGTATTATGAGTCTTAAAACTCAACTTCAGCGTATTAGGAAAGATGGTCTTACAGAATCAAGCA
TTTCAATGGAAATCGACGTTTTTAACATTACCGATGATTTAGGAGCTAAAGAATACGTTCGAGCCAAGAAAACAGCAAAGGAAGCAAAATTTTGGGCCTAG
Protein sequenceShow/hide protein sequence
MTIEASSSSSSSGPLSSPAITPSTSITTLVVTPISQRPQTPLPPRTNSVPQNPQIRRNTPPSQPFLNDTNFLLWKNQLLNVVLANGLHGFLDGSISAPPKFLDENQLQPN
LEFTTWQRYNRFIMCWIYSSPSEEKMREIVSLTTASEIWSFLTRAYDSRTTARIMSLKTQLQRIRKDGLTESSISMEIDVFNITDDLGAKEYVRAKKTAKEAKFWA