CuGenDBv2

Gene ID	Lag0036164
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	ATP-dependent clp protease
Genome location	chr3:40785349..40786090
RNA-Seq Expression	Lag0036164
Synteny	Lag0036164
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0034605 - cellular response to heat (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0005524 - ATP binding (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR041546 - ClpA/ClpB, AAA lid domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAF9838831.1 hypothetical protein H0E87_020292 [Populus deltoides]

1.3e-17

90.91

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

KAG6753285.1 hypothetical protein POTOM_043337 [Populus tomentosa]

1.3e-17

90.91

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

KAG6754265.1 hypothetical protein POTOM_042287 [Populus tomentosa]

1.3e-17

90.91

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

XP_021673391.1 chaperone protein ClpC, chloroplastic [Hevea brasiliensis]

1.3e-17

90.91

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

XP_034908897.1 chaperone protein ClpC, chloroplastic [Populus alba]

1.3e-17

90.91

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

TrEMBL top hits

e value

%identity

Alignment

A0A2G5C7R1 UVR domain-containing protein

8.0e-18

89.09

Show/hide

Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEAL+AAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

A0A2G5C7S5 Uncharacterized protein

8.0e-18

89.09

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEAL+AAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

A0A4U5MHH8 Uncharacterized protein

6.2e-18

90.91

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

A0A6A6MJV9 Clp R domain-containing protein

6.2e-18

90.91

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

A0A6P8DSM6 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like isoform X3

8.0e-18

89.09

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EPSVDETI ILKGLRERYEIHHKLRYTDEAL+AAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

SwissProt top hits

e value

%identity

Alignment

P31542 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

2.4e-19

85.45

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+VDETI ILKGLRERYEIHHKLRYTDE L+AAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

P35100 Chaperone protein ClpC, chloroplastic

3.7e-20

89.09

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+VDETI ILKGLRERYEIHHKLRYTDEALIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

P46523 ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment)

1.1e-19

85.45

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+VDETI ILKGLRERYEIHHKLRYTDE+L+AAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

Q7F9I1 Chaperone protein ClpC1, chloroplastic

7.0e-19

81.82

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+VDETI IL+GLRERYE+HHKLRYTD++LIAAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

Q9FI56 Chaperone protein ClpC1, chloroplastic

1.1e-19

85.45

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+VDETI ILKGLRERYEIHHKLRYTDE+L+AAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

Arabidopsis top hits

e value

%identity

Alignment

AT1G74310.1 heat shock protein 101

4.2e-11

61.54

Show/hide

Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYIS
        RRFQ V V+EPSV +TI IL+GL+E+YE HH +R  D ALI AA+LS +YI+
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYIS

AT3G48870.1 Clp ATPase

4.2e-19

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+V+E I IL+GLRERYEIHHKLRYTDEAL+AAA+LS+QYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

AT3G48870.2 Clp ATPase

4.2e-19

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+V+E I IL+GLRERYEIHHKLRYTDEAL+AAA+LS+QYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

AT5G15450.1 casein lytic proteinase B3

6.5e-12

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQ V V +P+V++TI IL+GLRERYE+HH +R +D AL+ AA LS +YIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

AT5G50920.1 CLPC homologue 1

7.7e-21

85.45

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Query:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF
        RRFQPVKV EP+VDETI ILKGLRERYEIHHKLRYTDE+L+AAA+LSYQYIS  F
Subjt:  RRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYF

Sequences

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CDS sequence

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ATGGCAAGAATCTTGAGCTCTGGAACTTCCTATCTAATCACTCCCTTATGCAAAGCAAGAAGATTTCAGCCAGTCAAAGTGTCGGAACCATCTGTGGATGAAACCATACC
AATCTTGAAAGGCCTTAGAGAGCGCTATGAAATCCATCACAAACTTCGTTACACGGATGAAGCATTAATAGCTGCTGCAGAGCTGTCATACCAGTACATCAGCTGCTATT
TTGAAACCCTAAACCTCTACTCTTCCTTCCACATTACCTCACGAAAATTAAGGAATAATCTTGGAACTCATTCTCTCGACTTAAACCCTAGACGACGTGTGACTGCAATA
CAAGACATTGGTTGA

mRNA sequence

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Protein sequence

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MARILSSGTSYLITPLCKARRFQPVKVSEPSVDETIPILKGLRERYEIHHKLRYTDEALIAAAELSYQYISCYFETLNLYSSFHITSRKLRNNLGTHSLDLNPRRRVTAI
QDIG

Lag0036164 (gene) of Sponge gourd (AG-4) v1 genome