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Lag0036184 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036184
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr3:41078671..41079177
RNA-Seq ExpressionLag0036184
SyntenyLag0036184
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]1.3e-2144.68Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+  A  WW+ V   E+    P++W+ FK L+ D++        +E EF+ L QGTL+V QY R+F ELS     L+ TE + I RFV GLR  IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK
         L RPAT+A A+  A I+D+D+  R     EVG+SSG K+K
Subjt:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]1.5e-2245.39Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+G A  WW+ V   E+    PI W+ FK L+ D++        +E EF+ LVQGTLSV QY R+F ELS     L+ TE + I RFV GLR  IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK
         L RP T+A A+  A ++D+D+  ++    EVG+SSG K+K
Subjt:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]9.6e-2238.96Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+G A  WW  V   E+    P++W+ FK L+ +++    A  E+  EF+ L QG+L+V QY R+F ELS      V TE++ I++F++GLR EI+GL+
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIPRSDQSQEVGTSSGAKKKHEVEVLAASQKVRG
         L  P T+AAA+  A ++D+ +      Q +G++SG K+K      +ASQ  RG
Subjt:  RLGRPATFAAALASARILDRDIPRSDQSQEVGTSSGAKKKHEVEVLAASQKVRG

XP_022156546.1 uncharacterized protein LOC111023424 [Momordica charantia]7.3e-2243.97Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+  A  WW+ V  TE+    P+ W+ FK L+ DH+     +  +E EF+ LVQGTL+V QY R+F ELS     L+ TE + I RFV GL   IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK
         L RP T+A A+    I+D+D+  R     EVG+S G K+K
Subjt:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]1.1e-2245.39Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+G A  WW+ V   E+    PI+W+ FK L+ D++  +     +E EF+    GTL+V QY R+F ELSC    L+ TE + I RFV GLR  IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIPRSDQS-QEVGTSSGAKKK
         L RPAT+A A+    I+D D+  S Q   EVG+SSG K+K
Subjt:  RLGRPATFAAALASARILDRDIPRSDQS-QEVGTSSGAKKK

TrEMBL top hitse value%identityAlignment
A0A6J1DQB9 Reverse transcriptase4.6e-2238.96Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+G A  WW  V   E+    P++W+ FK L+ +++    A  E+  EF+ L QG+L+V QY R+F ELS      V TE++ I++F++GLR EI+GL+
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIPRSDQSQEVGTSSGAKKKHEVEVLAASQKVRG
         L  P T+AAA+  A ++D+ +      Q +G++SG K+K      +ASQ  RG
Subjt:  RLGRPATFAAALASARILDRDIPRSDQSQEVGTSSGAKKKHEVEVLAASQKVRG

A0A6J1DQJ4 uncharacterized protein LOC1110228856.1e-2244.68Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+  A  WW+ V   E+    P++W+ FK L+ D++        +E EF+ L QGTL+V QY R+F ELS     L+ TE + I RFV GLR  IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK
         L RPAT+A A+  A I+D+D+  R     EVG+SSG K+K
Subjt:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK

A0A6J1DUM2 uncharacterized protein LOC1110232477.2e-2345.39Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+G A  WW+ V   E+    PI W+ FK L+ D++        +E EF+ LVQGTLSV QY R+F ELS     L+ TE + I RFV GLR  IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK
         L RP T+A A+  A ++D+D+  ++    EVG+SSG K+K
Subjt:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK

A0A6J1DVA0 uncharacterized protein LOC1110234243.6e-2243.97Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+  A  WW+ V  TE+    P+ W+ FK L+ DH+     +  +E EF+ LVQGTL+V QY R+F ELS     L+ TE + I RFV GL   IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK
         L RP T+A A+    I+D+D+  R     EVG+S G K+K
Subjt:  RLGRPATFAAALASARILDRDIP-RSDQSQEVGTSSGAKKK

A0A6J1DYU5 uncharacterized protein LOC1110255175.5e-2345.39Show/hide
Query:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV
        ML+G A  WW+ V   E+    PI+W+ FK L+ D++  +     +E EF+    GTL+V QY R+F ELSC    L+ TE + I RFV GLR  IRG V
Subjt:  MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLV

Query:  RLGRPATFAAALASARILDRDIPRSDQS-QEVGTSSGAKKK
         L RPAT+A A+    I+D D+  S Q   EVG+SSG K+K
Subjt:  RLGRPATFAAALASARILDRDIPRSDQS-QEVGTSSGAKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAAAGGCCACGCTCGCATTTGGTGGAACGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTCGGGGTTCAAAGGTCTTGTGCGAGACCATTT
TGGCTGTCGTTTTGCTGATGTCGAGCAAGAAACGGAGTTTGTCTCACTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGGTTCGAAGAGTTGTCCTGCCGAG
TCCCGGGGTTGGTTGCCACTGAAGAGGTTTGGATCAATCGATTCGTTAATGGGCTCCGCGCAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAGCCACCTTTGCAGCA
GCCCTAGCGAGCGCTCGGATATTGGATAGGGACATCCCCAGGTCGGATCAGTCCCAAGAGGTTGGCACGTCGTCTGGTGCCAAGAAGAAGCACGAAGTGGAAGTGCTTGC
AGCTAGTCAGAAGGTTAGAGGATCTCCGTCAGGGTCTAGTGCGTGCACTGAGGAGTTCTTGCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAAAGGCCACGCTCGCATTTGGTGGAACGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTCGGGGTTCAAAGGTCTTGTGCGAGACCATTT
TGGCTGTCGTTTTGCTGATGTCGAGCAAGAAACGGAGTTTGTCTCACTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGGTTCGAAGAGTTGTCCTGCCGAG
TCCCGGGGTTGGTTGCCACTGAAGAGGTTTGGATCAATCGATTCGTTAATGGGCTCCGCGCAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAGCCACCTTTGCAGCA
GCCCTAGCGAGCGCTCGGATATTGGATAGGGACATCCCCAGGTCGGATCAGTCCCAAGAGGTTGGCACGTCGTCTGGTGCCAAGAAGAAGCACGAAGTGGAAGTGCTTGC
AGCTAGTCAGAAGGTTAGAGGATCTCCGTCAGGGTCTAGTGCGTGCACTGAGGAGTTCTTGCCCTGA
Protein sequenceShow/hide protein sequence
MLKGHARIWWNVVGQTENRPENPISWSGFKGLVRDHFGCRFADVEQETEFVSLVQGTLSVEQYVRRFEELSCRVPGLVATEEVWINRFVNGLRAEIRGLVRLGRPATFAA
ALASARILDRDIPRSDQSQEVGTSSGAKKKHEVEVLAASQKVRGSPSGSSACTEEFLP