; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036224 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036224
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:41954615..41955424
RNA-Seq ExpressionLag0036224
SyntenyLag0036224
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]1.3e-1730.04Show/hide
Query:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFR---------------------
        L D W    LT EEE + V  D   VD T    + CL+GKL   RP+  EVMR      WK   GLQV  +G NLFIF+                     
Subjt:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFR---------------------

Query:  ---------------------------------FVNE------------IDHVDNRNGFLSWGSSLRIRVRLDLNRPLRRG-IRIFPDGSFSGLWVPMRY
                                         F+NE            ++ +D     ++WG  LR R RL++ +PLRRG I   P+G    + +  RY
Subjt:  ---------------------------------FVNE------------IDHVDNRNGFLSWGSSLRIRVRLDLNRPLRRG-IRIFPDGSFSGLWVPMRY

Query:  EQLPKICSNFGIIGPFSREC--AFLLRSDRGFNYPPQYGDWLR
        E+LP  C   G +     EC  A ++R D+G     +YG WLR
Subjt:  EQLPKICSNFGIIGPFSREC--AFLLRSDRGFNYPPQYGDWLR

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.9e-2732.14Show/hide
Query:  MDPSSLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID----------
        MD  +L+ DW +  LTSEE+EI +  D D V      L + L+GKL   R +  +V+ +    AWK ++ L V+ +G+NLF+F F  E D          
Subjt:  MDPSSLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID----------

Query:  --------------------------------------------------------HVD-NRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLW
                                                                 VD N  GF SWG+SLRIRV +D+ +PLRRGI+I  DG   G W
Subjt:  --------------------------------------------------------HVD-NRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLW

Query:  VPMRYEQLPKICSNFGIIGPFSREC-AFLLRSDRGFNYPPQYGDWLRFSGKR
        +P++YE+LP  C   G+IG  S +C A  L +        +YG WLRF G +
Subjt:  VPMRYEQLPKICSNFGIIGPFSREC-AFLLRSDRGFNYPPQYGDWLRFSGKR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.6e-2128.69Show/hide
Query:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFD-NGLQVDRLGRNLFIFRFVNEID--------------
        L+++W    LTSEEEE  +  D      T   L+  L+GKLF  RP+   VM+   R AWK + N  +V  LG NLF+F F   +D              
Subjt:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFD-NGLQVDRLGRNLFIFRFVNEID--------------

Query:  ------------------------------------------HVDNRNGFL----------SWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVPMRY
                                                   + N  G             WGS+LR+RV LD+++PLRRGI++  DG   G W+P++Y
Subjt:  ------------------------------------------HVDNRNGFL----------SWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVPMRY

Query:  EQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPPQYGDWLRFSG
        E+LP  C + G+     +                QYG WLR+ G
Subjt:  EQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPPQYGDWLRFSG

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]3.0e-1730.2Show/hide
Query:  SLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSL---DFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID-----------
        SL+D    L LTSEE+ +     R G + TSL +   D CL+GKL   RP   E M+    + W+   G+QV  +G NLF+F F + +D           
Subjt:  SLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSL---DFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID-----------

Query:  -----------------------------HV--------------------------DNRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVP
                                     HV                          D  +G + WG ++RIRV LD+ +PLRRG+++    S   +WV 
Subjt:  -----------------------------HV--------------------------DNRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVP

Query:  MRYEQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPP-QYGDWLR
         +YE+LP  C   G +G   REC   L S  G      QYG WLR
Subjt:  MRYEQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPP-QYGDWLR

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]3.0e-1729.8Show/hide
Query:  SLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSL---DFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID-----------
        SL+D    L LTSEE+ +     R G D TSL +   D CL+GKL   RP   E M+    + W+   G+QV  +G NLF+F F + +D           
Subjt:  SLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSL---DFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID-----------

Query:  -----------------------------HV--------------------------DNRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVP
                                     HV                          D  +G ++WG ++RIRV +D+ +PLRRG+++    S   +WV 
Subjt:  -----------------------------HV--------------------------DNRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVP

Query:  MRYEQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPP-QYGDWLR
         +YE+LP  C   G +G   REC   L    G      QYG WLR
Subjt:  MRYEQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPP-QYGDWLR

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase6.5e-1830.04Show/hide
Query:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFR---------------------
        L D W    LT EEE + V  D   VD T    + CL+GKL   RP+  EVMR      WK   GLQV  +G NLFIF+                     
Subjt:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFR---------------------

Query:  ---------------------------------FVNE------------IDHVDNRNGFLSWGSSLRIRVRLDLNRPLRRG-IRIFPDGSFSGLWVPMRY
                                         F+NE            ++ +D     ++WG  LR R RL++ +PLRRG I   P+G    + +  RY
Subjt:  ---------------------------------FVNE------------IDHVDNRNGFLSWGSSLRIRVRLDLNRPLRRG-IRIFPDGSFSGLWVPMRY

Query:  EQLPKICSNFGIIGPFSREC--AFLLRSDRGFNYPPQYGDWLR
        E+LP  C   G +     EC  A ++R D+G     +YG WLR
Subjt:  EQLPKICSNFGIIGPFSREC--AFLLRSDRGFNYPPQYGDWLR

A0A2N9HDU2 Uncharacterized protein3.9e-1528.44Show/hide
Query:  WSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID-------------------
        W RL L+  EE+ ++L      + T  S    L  K F  R +  E + + FR  W+ +NG     +G N+ IF F +E D                   
Subjt:  WSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID-------------------

Query:  ---------------HVDNRNGFLSWGSSLRIRVRLDLNRPLRRGIRI-FPDGSFSGLWVPMRYEQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPPQ-
                          + +  L  G  +RIRV++++N+PL RG +I   +G  S  W   RYE+LP  C   G++    ++C F LR+        Q 
Subjt:  ---------------HVDNRNGFLSWGSSLRIRVRLDLNRPLRRGIRI-FPDGSFSGLWVPMRYEQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPPQ-

Query:  YGDWLRFSGKR
        YG WLR  G R
Subjt:  YGDWLRFSGKR

A0A2N9IG44 CCHC-type domain-containing protein8.4e-1831.77Show/hide
Query:  MDPSSLIDDWSRLGLTSEEEEIY-VLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNE-----------
        M   +L++DW +  LT  E   + V  D  G  RT  S   CLLGKL   +    EV++      W    G+    +  NLF F+F NE           
Subjt:  MDPSSLIDDWSRLGLTSEEEEIY-VLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNE-----------

Query:  ---------------------IDHVDNRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVPMRYEQLPKICSNFGIIGPFSRECA
                             +  VD     + WGS+LR+R++LD  RP+ RG R+    S   +WV  RYE+LP IC + G+IG   R+CA
Subjt:  ---------------------IDHVDNRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVPMRYEQLPKICSNFGIIGPFSRECA

A0A6J1DU55 uncharacterized protein LOC1110231359.0e-2832.14Show/hide
Query:  MDPSSLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID----------
        MD  +L+ DW +  LTSEE+EI +  D D V      L + L+GKL   R +  +V+ +    AWK ++ L V+ +G+NLF+F F  E D          
Subjt:  MDPSSLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEID----------

Query:  --------------------------------------------------------HVD-NRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLW
                                                                 VD N  GF SWG+SLRIRV +D+ +PLRRGI+I  DG   G W
Subjt:  --------------------------------------------------------HVD-NRNGFLSWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLW

Query:  VPMRYEQLPKICSNFGIIGPFSREC-AFLLRSDRGFNYPPQYGDWLRFSGKR
        +P++YE+LP  C   G+IG  S +C A  L +        +YG WLRF G +
Subjt:  VPMRYEQLPKICSNFGIIGPFSREC-AFLLRSDRGFNYPPQYGDWLRFSGKR

A0A6J1DX30 uncharacterized protein LOC1110248741.3e-2128.69Show/hide
Query:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFD-NGLQVDRLGRNLFIFRFVNEID--------------
        L+++W    LTSEEEE  +  D      T   L+  L+GKLF  RP+   VM+   R AWK + N  +V  LG NLF+F F   +D              
Subjt:  LIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFD-NGLQVDRLGRNLFIFRFVNEID--------------

Query:  ------------------------------------------HVDNRNGFL----------SWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVPMRY
                                                   + N  G             WGS+LR+RV LD+++PLRRGI++  DG   G W+P++Y
Subjt:  ------------------------------------------HVDNRNGFL----------SWGSSLRIRVRLDLNRPLRRGIRIFPDGSFSGLWVPMRY

Query:  EQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPPQYGDWLRFSG
        E+LP  C + G+     +                QYG WLR+ G
Subjt:  EQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPPQYGDWLRFSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTTCCTCTTTGATTGACGATTGGTCACGACTGGGCCTAACATCGGAGGAGGAAGAAATTTATGTGCTTGCTGACAGAGATGGGGTGGATAGAACTAGTCTCTC
TCTGGATTTCTGTTTGCTTGGAAAATTGTTTTGCCATCGTCCTCTAGGCACCGAGGTTATGAGGAAGAACTTTCGAGCGGCTTGGAAGTTTGATAATGGGCTGCAGGTGG
ATCGACTTGGGAGGAATCTGTTTATTTTCCGTTTTGTAAATGAGATCGATCATGTTGACAACAGAAATGGGTTTCTTTCATGGGGTTCAAGCTTGCGGATTCGTGTTCGT
CTCGACTTGAATCGTCCTCTTCGACGCGGTATTCGTATCTTTCCAGATGGGTCGTTTAGTGGATTATGGGTTCCCATGAGGTATGAGCAGTTGCCAAAGATTTGTTCGAA
CTTTGGTATCATTGGCCCTTTCTCTCGAGAGTGTGCTTTTCTCTTGCGATCGGATCGTGGTTTTAACTACCCTCCACAATACGGTGACTGGCTTCGGTTTTCAGGGAAGA
GGATGCTAATCACTCCAATCTCGTTGAGGGAGAATGGCAATGTGACTGATCGGGAAATTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTTCCTCTTTGATTGACGATTGGTCACGACTGGGCCTAACATCGGAGGAGGAAGAAATTTATGTGCTTGCTGACAGAGATGGGGTGGATAGAACTAGTCTCTC
TCTGGATTTCTGTTTGCTTGGAAAATTGTTTTGCCATCGTCCTCTAGGCACCGAGGTTATGAGGAAGAACTTTCGAGCGGCTTGGAAGTTTGATAATGGGCTGCAGGTGG
ATCGACTTGGGAGGAATCTGTTTATTTTCCGTTTTGTAAATGAGATCGATCATGTTGACAACAGAAATGGGTTTCTTTCATGGGGTTCAAGCTTGCGGATTCGTGTTCGT
CTCGACTTGAATCGTCCTCTTCGACGCGGTATTCGTATCTTTCCAGATGGGTCGTTTAGTGGATTATGGGTTCCCATGAGGTATGAGCAGTTGCCAAAGATTTGTTCGAA
CTTTGGTATCATTGGCCCTTTCTCTCGAGAGTGTGCTTTTCTCTTGCGATCGGATCGTGGTTTTAACTACCCTCCACAATACGGTGACTGGCTTCGGTTTTCAGGGAAGA
GGATGCTAATCACTCCAATCTCGTTGAGGGAGAATGGCAATGTGACTGATCGGGAAATTCCTTAG
Protein sequenceShow/hide protein sequence
MDPSSLIDDWSRLGLTSEEEEIYVLADRDGVDRTSLSLDFCLLGKLFCHRPLGTEVMRKNFRAAWKFDNGLQVDRLGRNLFIFRFVNEIDHVDNRNGFLSWGSSLRIRVR
LDLNRPLRRGIRIFPDGSFSGLWVPMRYEQLPKICSNFGIIGPFSRECAFLLRSDRGFNYPPQYGDWLRFSGKRMLITPISLRENGNVTDREIP