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Lag0036238 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036238
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:42300635..42301090
RNA-Seq ExpressionLag0036238
SyntenyLag0036238
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER41574.1 cellular nucleic acid-binding protein [Striga asiatica]3.0e-0635.71Show/hide
Query:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK----FQGFNGKTKGLGSPSRSPTDPSN
        V+ E   +   + + YER+ +FC+ CG+IGHV+K+C       E N E+L FG W+K      G   + +G  SP  SP   S+
Subjt:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK----FQGFNGKTKGLGSPSRSPTDPSN

PON70694.1 Zinc knuckle CX2CX4HX4C [Trema orientale]5.1e-0636.76Show/hide
Query:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMKFQGFNGKTKGL
        ++   S    WV  RYE++  FCF CG+IGH++K+CLE  +   I+     +G+WMK     G +K +
Subjt:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMKFQGFNGKTKGL

PPR92754.1 hypothetical protein GOBAR_AA27921 [Gossypium barbadense]6.6e-0644.44Show/hide
Query:  EESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK
        ++ GE   V I+YER+++FC+ CG IGH +K C   K G+E+N  +L++G WM+
Subjt:  EESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK

XP_023877292.1 uncharacterized protein LOC111989727 [Quercus suber]6.0e-0727.7Show/hide
Query:  TEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMKFQGFNGKTKGLGSPSRSPTDPSNKDLNGDESFGKEASINEGLDVD
        T   GE  W+  +YER+  FCF CGK+GH +K C +   G +IN+   ++G W++     G+ KG    +RS +  S + +  + +  +   + +  D  
Subjt:  TEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMKFQGFNGKTKGLGSPSRSPTDPSNKDLNGDESFGKEASINEGLDVD

Query:  LNKISPVYEGPEE-DTREEIQQAKDTDMDDDIRYNKNEDNWDVLQLME
        +  +S   E   E  TR++  +  +T+M + I     +D WD ++ +E
Subjt:  LNKISPVYEGPEE-DTREEIQQAKDTDMDDDIRYNKNEDNWDVLQLME

XP_023887043.1 uncharacterized protein LOC111999158 [Quercus suber]6.6e-0641.57Show/hide
Query:  TEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLE--FGMWMKFQGFNGKT-KGLGSPSRSPTDPSNKDLNGDES
        T   GE CWV+ +YER+  FCF CGKIGH  K C     G+   K+ LE  +G W++     G+T KG    SR+    S K  +G ES
Subjt:  TEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLE--FGMWMKFQGFNGKT-KGLGSPSRSPTDPSNKDLNGDES

TrEMBL top hitse value%identityAlignment
A0A2P5DBM1 Zinc knuckle CX2CX4HX4C2.5e-0636.76Show/hide
Query:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMKFQGFNGKTKGL
        ++   S    WV  RYE++  FCF CG+IGH++K+CLE  +   I+     +G+WMK     G +K +
Subjt:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMKFQGFNGKTKGL

A0A2P5WNU7 Uncharacterized protein3.2e-0644.44Show/hide
Query:  EESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK
        ++ GE   V I+YER+++FC+ CG IGH +K C   K G+E+N  +L++G WM+
Subjt:  EESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK

A0A5A7Q953 Cellular nucleic acid-binding protein1.4e-0635.71Show/hide
Query:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK----FQGFNGKTKGLGSPSRSPTDPSN
        V+ E   +   + + YER+ +FC+ CG+IGHV+K+C       E N E+L FG W+K      G   + +G  SP  SP   S+
Subjt:  VKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK----FQGFNGKTKGLGSPSRSPTDPSN

A0A5C7GW09 CCHC-type domain-containing protein3.2e-0637.8Show/hide
Query:  IRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK-FQGFNGKTKGLGSPSRSPTDPSNKDLNGDESFGKEAS
        I+YER+ +FCF CG +GH  KDC +    +E  KEDL FG WM+    + G   G G    +    SNK+L  +    +  S
Subjt:  IRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMK-FQGFNGKTKGLGSPSRSPTDPSNKDLNGDESFGKEAS

A0A803P5A1 Uncharacterized protein3.2e-0634.12Show/hide
Query:  MVKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEI-NKEDLEFGMWMKFQGFNGKTKGLGSPSRSPTDPSNKDL
        M+   +  +  W+  RYER++EFCF CG +GH  + C++    ++  N +D+ +G WMK         GL SPS  P+   N  L
Subjt:  MVKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEI-NKEDLEFGMWMKFQGFNGKTKGLGSPSRSPTDPSNKDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAAACCGAAGAATCCGGCGAATCATGTTGGGTCACAATTAGATACGAACGGATTGCAGAATTTTGCTTCTTTTGTGGCAAAATTGGTCATGTTGTCAAAGATTG
TCTAGAACCAAAGAATGGGATAGAGATCAATAAAGAAGACCTGGAATTTGGTATGTGGATGAAGTTCCAAGGATTTAATGGTAAAACCAAAGGCCTAGGCTCCCCAAGTA
GAAGTCCAACAGATCCCAGCAACAAAGACCTGAATGGTGATGAATCTTTTGGAAAAGAGGCAAGTATAAATGAAGGTCTGGATGTTGATCTAAACAAAATTAGTCCAGTA
TATGAAGGTCCTGAGGAAGATACAAGGGAGGAGATACAACAAGCCAAAGATACAGACATGGATGATGACATAAGATACAATAAGAATGAGGATAACTGGGATGTTCTCCA
ACTCATGGAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAAACCGAAGAATCCGGCGAATCATGTTGGGTCACAATTAGATACGAACGGATTGCAGAATTTTGCTTCTTTTGTGGCAAAATTGGTCATGTTGTCAAAGATTG
TCTAGAACCAAAGAATGGGATAGAGATCAATAAAGAAGACCTGGAATTTGGTATGTGGATGAAGTTCCAAGGATTTAATGGTAAAACCAAAGGCCTAGGCTCCCCAAGTA
GAAGTCCAACAGATCCCAGCAACAAAGACCTGAATGGTGATGAATCTTTTGGAAAAGAGGCAAGTATAAATGAAGGTCTGGATGTTGATCTAAACAAAATTAGTCCAGTA
TATGAAGGTCCTGAGGAAGATACAAGGGAGGAGATACAACAAGCCAAAGATACAGACATGGATGATGACATAAGATACAATAAGAATGAGGATAACTGGGATGTTCTCCA
ACTCATGGAAAATTAA
Protein sequenceShow/hide protein sequence
MVKTEESGESCWVTIRYERIAEFCFFCGKIGHVVKDCLEPKNGIEINKEDLEFGMWMKFQGFNGKTKGLGSPSRSPTDPSNKDLNGDESFGKEASINEGLDVDLNKISPV
YEGPEEDTREEIQQAKDTDMDDDIRYNKNEDNWDVLQLMEN