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Lag0036244 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036244
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like domain containing protein
Genome locationchr3:42366769..42367338
RNA-Seq ExpressionLag0036244
SyntenyLag0036244
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.3e-0830.82Show/hide
Query:  ERMDGESFEEFSMILWAVWGCQNRCRSLG--VATTIGLSDWAVAYVAVFRDARWAGAGS--FERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGV
        +R+     EE S+ LWA+W  +N+           + + DW   Y+ V++ A+   +     + R  R    W       +KVNVDA+    +  A + +
Subjt:  ERMDGESFEEFSMILWAVWGCQNRCRSLG--VATTIGLSDWAVAYVAVFRDARWAGAGS--FERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGV

Query:  VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV
        ++RD    VLL A+ F+  +    LAE LA  EG+ LA+E G     +ETDSS++F L+
Subjt:  VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.4e-0828.49Show/hide
Query:  LMDMKERMDGESFEEFSMILWAVWGCQNR-CRSLGVATTIGLSDWAVAYVAVFR-----------DARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA
        L D ++ ++ + FEE  + LW++W  +N    +        L+ W   Y+A F+           D   +   S +    ++   W  +    +K+  DA
Subjt:  LMDMKERMDGESFEEFSMILWAVWGCQNR-CRSLGVATTIGLSDWAVAYVAVFR-----------DARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA

Query:  SSSPESSLASVGV-VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQL
        S S     A +GV ++RD +  VL  A K++  +   D AE LA  EG+++AME G   +++ETDS RI+ L
Subjt:  SSSPESSLASVGV-VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.5e-1037.5Show/hide
Query:  LSDWAVAYVAVFRDARWAGAGSFERRL-NRSEVRWVQSAWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLA
        L +WA  YV  FR+   A +  F  R+ N +EV W+      YK+N DAS       A +G+++R+ +  V+  A K++  I+  D+AE +   EG++LA
Subjt:  LSDWAVAYVAVFRDARWAGAGSFERRL-NRSEVRWVQSAWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLA

Query:  MEMGFKLVVVETDSSRIFQL
         ++G   V++ETDSSRIF L
Subjt:  MEMGFKLVVVETDSSRIFQL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]2.3e-0828.39Show/hide
Query:  VSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCRSLGVATT------IGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA
        +S    L +  E +    FEE  +++W +W  Q   R+   +T       + L +WA  Y   FR+A+        R  N +E+ W       YK+N DA
Subjt:  VSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCRSLGVATT------IGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA

Query:  SSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMG
        S       A +G+++ + +  V+  A K++  I+  D+AE +A  EG++LA E+G
Subjt:  SSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMG

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]9.2e-1333.33Show/hide
Query:  ELSKFDGLLQVPMSVSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCR---SLGVATTIGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQS
        + S F  LL VP+   +  F+    + +  +      ++LWA+W  +N+     SLG  +   L  W+  Y+ V++ A+ +   +           W   
Subjt:  ELSKFDGLLQVPMSVSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCR---SLGVATTIGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQS

Query:  AWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV
        A    KVNVDA+   ES +A VGV++RD    V L AI+ + R    D  EG AV EG+ LA+E GF    +ETDS RIF L+
Subjt:  AWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077751.1e-0830.82Show/hide
Query:  ERMDGESFEEFSMILWAVWGCQNRCRSLG--VATTIGLSDWAVAYVAVFRDARWAGAGS--FERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGV
        +R+     EE S+ LWA+W  +N+           + + DW   Y+ V++ A+   +     + R  R    W       +KVNVDA+    +  A + +
Subjt:  ERMDGESFEEFSMILWAVWGCQNRCRSLG--VATTIGLSDWAVAYVAVFRDARWAGAGS--FERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGV

Query:  VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV
        ++RD    VLL A+ F+  +    LAE LA  EG+ LA+E G     +ETDSS++F L+
Subjt:  VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV

A0A6J1CDQ4 uncharacterized protein LOC1110105336.6e-0928.49Show/hide
Query:  LMDMKERMDGESFEEFSMILWAVWGCQNR-CRSLGVATTIGLSDWAVAYVAVFR-----------DARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA
        L D ++ ++ + FEE  + LW++W  +N    +        L+ W   Y+A F+           D   +   S +    ++   W  +    +K+  DA
Subjt:  LMDMKERMDGESFEEFSMILWAVWGCQNR-CRSLGVATTIGLSDWAVAYVAVFR-----------DARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA

Query:  SSSPESSLASVGV-VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQL
        S S     A +GV ++RD +  VL  A K++  +   D AE LA  EG+++AME G   +++ETDS RI+ L
Subjt:  SSSPESSLASVGV-VVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQL

A0A6J1CIF1 uncharacterized protein LOC1110112377.1e-1137.5Show/hide
Query:  LSDWAVAYVAVFRDARWAGAGSFERRL-NRSEVRWVQSAWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLA
        L +WA  YV  FR+   A +  F  R+ N +EV W+      YK+N DAS       A +G+++R+ +  V+  A K++  I+  D+AE +   EG++LA
Subjt:  LSDWAVAYVAVFRDARWAGAGSFERRL-NRSEVRWVQSAWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLA

Query:  MEMGFKLVVVETDSSRIFQL
         ++G   V++ETDSSRIF L
Subjt:  MEMGFKLVVVETDSSRIFQL

A0A6J1DAR4 uncharacterized protein LOC1110189541.1e-0828.39Show/hide
Query:  VSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCRSLGVATT------IGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA
        +S    L +  E +    FEE  +++W +W  Q   R+   +T       + L +WA  Y   FR+A+        R  N +E+ W       YK+N DA
Subjt:  VSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCRSLGVATT------IGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDA

Query:  SSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMG
        S       A +G+++ + +  V+  A K++  I+  D+AE +A  EG++LA E+G
Subjt:  SSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMG

A0A6J1DBJ7 uncharacterized protein LOC1110189734.4e-1333.33Show/hide
Query:  ELSKFDGLLQVPMSVSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCR---SLGVATTIGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQS
        + S F  LL VP+   +  F+    + +  +      ++LWA+W  +N+     SLG  +   L  W+  Y+ V++ A+ +   +           W   
Subjt:  ELSKFDGLLQVPMSVSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCR---SLGVATTIGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQS

Query:  AWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV
        A    KVNVDA+   ES +A VGV++RD    V L AI+ + R    D  EG AV EG+ LA+E GF    +ETDS RIF L+
Subjt:  AWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAAGTTTGTGGGGAGAGTGTTGGAATTGTCGAAGTTTGACGGCCTTTTGCAGGTTCCTATGTCTGTGAGTATCTTGTTCTTCCTGATGGATATGAAGGAGAGAAT
GGATGGGGAATCTTTTGAGGAGTTTTCTATGATTCTGTGGGCTGTTTGGGGTTGCCAGAATAGGTGTAGAAGTTTGGGTGTTGCAACGACGATTGGTTTGTCAGATTGGG
CAGTGGCGTATGTGGCCGTTTTTCGGGATGCAAGATGGGCAGGGGCTGGAAGTTTTGAGAGGCGGCTGAATCGGTCTGAGGTTAGGTGGGTTCAGTCGGCGTGGAATCAG
TATAAGGTGAATGTGGATGCTTCCTCCTCACCGGAGTCGTCGTTGGCTAGTGTGGGGGTTGTCGTACGAGATTTGAAGAGGTTTGTTTTGCTCTATGCGATTAAATTTGT
GGGCAGAATTCGGTGCTCTGATTTGGCAGAGGGACTGGCTGTTGCTGAGGGGATGAAGCTGGCGATGGAAATGGGTTTTAAGCTTGTGGTTGTTGAGACAGATTCGAGTA
GAATTTTCCAGCTAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTAAGTTTGTGGGGAGAGTGTTGGAATTGTCGAAGTTTGACGGCCTTTTGCAGGTTCCTATGTCTGTGAGTATCTTGTTCTTCCTGATGGATATGAAGGAGAGAAT
GGATGGGGAATCTTTTGAGGAGTTTTCTATGATTCTGTGGGCTGTTTGGGGTTGCCAGAATAGGTGTAGAAGTTTGGGTGTTGCAACGACGATTGGTTTGTCAGATTGGG
CAGTGGCGTATGTGGCCGTTTTTCGGGATGCAAGATGGGCAGGGGCTGGAAGTTTTGAGAGGCGGCTGAATCGGTCTGAGGTTAGGTGGGTTCAGTCGGCGTGGAATCAG
TATAAGGTGAATGTGGATGCTTCCTCCTCACCGGAGTCGTCGTTGGCTAGTGTGGGGGTTGTCGTACGAGATTTGAAGAGGTTTGTTTTGCTCTATGCGATTAAATTTGT
GGGCAGAATTCGGTGCTCTGATTTGGCAGAGGGACTGGCTGTTGCTGAGGGGATGAAGCTGGCGATGGAAATGGGTTTTAAGCTTGTGGTTGTTGAGACAGATTCGAGTA
GAATTTTCCAGCTAGTGTAG
Protein sequenceShow/hide protein sequence
MSKFVGRVLELSKFDGLLQVPMSVSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCRSLGVATTIGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQ
YKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV