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Lag0036259 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036259
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S12
Genome locationchr3:42718574..42720121
RNA-Seq ExpressionLag0036259
SyntenyLag0036259
Gene Ontology termsGO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
P84175 40S ribosomal protein S127.6e-0490.91Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVK
        LCKID EGK RKVVGCSCVVVK
Subjt:  LCKIDSEGKARKVVGCSCVVVK
Q76I81 40S ribosomal protein S127.6e-0490.91Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVK
        LCKID EGK RKVVGCSCVVVK
Subjt:  LCKIDSEGKARKVVGCSCVVVK
Q9S9P1 40S ribosomal protein S12-11.5e-0487.5Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVKIF
        LCKIDSEG ARKVVGCSC+VVK F
Subjt:  LCKIDSEGKARKVVGCSCVVVKIF
Q9SKZ3 40S ribosomal protein S12-22.0e-0461.54Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK
        LCKIDSEG ARKVVGCSC+V+K F   G+      I KK
Subjt:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK
Q9XHS0 40S ribosomal protein S121.5e-0490.91Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVK
        LCKID+EGKARKVVGCSC+VVK
Subjt:  LCKIDSEGKARKVVGCSCVVVK
Arabidopsis top hitse value%identityAlignment
AT1G15930.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-0587.5Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVKIF
        LCKIDSEG ARKVVGCSC+VVK F
Subjt:  LCKIDSEGKARKVVGCSCVVVKIF
AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-0587.5Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVKIF
        LCKIDSEG ARKVVGCSC+VVK F
Subjt:  LCKIDSEGKARKVVGCSCVVVKIF
AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.4e-0561.54Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK
        LCKIDSEG ARKVVGCSC+V+K F   G+      I KK
Subjt:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK
AT2G32060.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.4e-0561.54Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK
        LCKIDSEG ARKVVGCSC+V+K F   G+      I KK
Subjt:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK
AT2G32060.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.4e-0561.54Show/hide
Query:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK
        LCKIDSEG ARKVVGCSC+V+K F   G+      I KK
Subjt:  LCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCACATGATTTGCAATCTCAGAGAACATAAACATTTCAAAACTGCACAAAGTTTGCTTGAAAAGATTGCAAATAAGCTATGCAAGATTGATTCTGAAGGAAAGGC
TAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGATTTTTGTTGGTGGTGGAGATGCTGCTGTAGAAGCCCCAATTGAGAAGAAGGAAGAGAATGATGTCGAAGACC
TTGGCCTTTCACTTTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCCACATGATTTGCAATCTCAGAGAACATAAACATTTCAAAACTGCACAAAGTTTGCTTGAAAAGATTGCAAATAAGCTATGCAAGATTGATTCTGAAGGAAAGGC
TAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGATTTTTGTTGGTGGTGGAGATGCTGCTGTAGAAGCCCCAATTGAGAAGAAGGAAGAGAATGATGTCGAAGACC
TTGGCCTTTCACTTTTTGATTAG
Protein sequenceShow/hide protein sequence
MLHMICNLREHKHFKTAQSLLEKIANKLCKIDSEGKARKVVGCSCVVVKIFVGGGDAAVEAPIEKKEENDVEDLGLSLFD