; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036263 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036263
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSOSS complex subunit B homolog
Genome locationchr3:42847357..42847776
RNA-Seq ExpressionLag0036263
SyntenyLag0036263
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]4.0e-6693.43Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDT +S KYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]6.6e-6996.35Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDTT+SKKYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

XP_022968811.1 SOSS complex subunit B homolog [Cucurbita maxima]1.3e-6794.16Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTM+GQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDT++SKKYVKESV+SPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]1.5e-6894.89Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVL+KG TT+EGQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDTT+SKKYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]1.6e-6794.89Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI+LKDLVPAAQNNVNTQFIVLEKG T MEGQNKACQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDTT+S KYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

TrEMBL top hitse value%identityAlignment
A0A0A0LW03 Uncharacterized protein1.9e-6693.43Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDT +S KYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

A0A1S3BPN4 SOSS complex subunit B homolog1.9e-6693.43Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDT +S KYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

A0A5D3CIR3 SOSS complex subunit B-like protein1.9e-6693.43Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDT +S KYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

A0A6J1HAL0 SOSS complex subunit B homolog3.2e-6996.35Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTMEGQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDTT+SKKYVKESVLSPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

A0A6J1HZ66 SOSS complex subunit B homolog6.1e-6894.16Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKG TTM+GQNK CQSLVADETAAVHFQLWGEECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPNMSEIHWVPDT++SKKYVKESV+SPYSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP

SwissProt top hitse value%identityAlignment
A5D7P8 SOSS complex subunit B21.2e-1240.57Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +KD+ P  + N+N  FIVLE G+ T        +S  VAD+T ++   +W E   +++P DIIRLT G  S  +   L L  G+ G+++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

A6QLK2 SOSS complex subunit B11.6e-1238.68Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +KD+ P  + N+N  FIVLE G+ T        ++  VAD+T +++  +W +  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q54X41 SOSS complex subunit B homolog9.8e-1536.5Show/hide
Query:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVF
        +I + ++ P ++ N+N  FIVL+KG  T + +    Q LVAD TA+++  +W    + ++P DI+RL  G +S      L L  GK G IEK+GEF   F
Subjt:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHW--VPDTTDSKKYVKESVLSPYSRIFP
        VE PN+S   W    D  + K  V     SP+ +  P
Subjt:  VETPNMSEIHW--VPDTTDSKKYVKESVLSPYSRIFP

Q96AH0 SOSS complex subunit B29.1e-1339.45Show/hide
Query:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        +I ++D+ P  + N+N  FIVLE G+ T        +S  VAD+T ++   +W E   +++P DIIRLT G  S  +   L L  G+ G+++K+GEF MV
Subjt:  MISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSE
        + E PN SE
Subjt:  FVETPNMSE

Q9BQ15 SOSS complex subunit B11.6e-1238.68Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE
        +KD+ P  + N+N  FIVLE G+ T        ++  VAD+T +++  +W +  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSL-VADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein3.1e-4861.31Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV
        M + LKD+VPAAQNN++T+FI+L+K K++       C +L ADETAAVH QLWG+ECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + 
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP
        FVETPN+SEI W+PD  + K+Y++  V+S YSRIFPP
Subjt:  FVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAATACACAGTTCATAGTTTTGGAGAAAGGCAAGACAACAATGGAAGGACAAAACAAGGCATG
CCAATCACTGGTGGCCGACGAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGAGGAGTGCGACGTCGTCGAGCCGAGCGACATTATACGCTTGACGAATGGGATATTCT
CCTACAGCCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATC
CATTGGGTTCCCGACACGACTGACTCGAAGAAGTACGTGAAGGAATCCGTTCTATCTCCCTATTCTCGCATCTTTCCGCCGAACCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAATACACAGTTCATAGTTTTGGAGAAAGGCAAGACAACAATGGAAGGACAAAACAAGGCATG
CCAATCACTGGTGGCCGACGAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGAGGAGTGCGACGTCGTCGAGCCGAGCGACATTATACGCTTGACGAATGGGATATTCT
CCTACAGCCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATC
CATTGGGTTCCCGACACGACTGACTCGAAGAAGTACGTGAAGGAATCCGTTCTATCTCCCTATTCTCGCATCTTTCCGCCGAACCATTGA
Protein sequenceShow/hide protein sequence
MMISLKDLVPAAQNNVNTQFIVLEKGKTTMEGQNKACQSLVADETAAVHFQLWGEECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEI
HWVPDTTDSKKYVKESVLSPYSRIFPPNH