CuGenDBv2

Gene ID	Lag0036293
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr3:43564689..43565192
RNA-Seq Expression	Lag0036293
Synteny	Lag0036293
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0005488 - binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]

1.2e-29

52.48

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL Q+LHCT+AK+IW  L  I++SR+LA+ M+ K KL N++KG  S+ EY  KI++C+DALA+I K +  +DHI+YILAGLG+EY+ ++ VI+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR
         + +VQDV++LLLT ES+IESK  I ++  LPT N+    R
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]

8.1e-29

49.01

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M+E IL Q+LH T+AK+IW  L  I++SR+LA+ M+ K KL N++KG  S+ EY  KI++C+DALA+I K +  +DHI+YILAGLG+EY+ I+ +I+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR----IQKEND
         + +VQD ++LLLT ES+IESK  I ++  LPT N+    R    ++KE++
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR----IQKEND

XP_022136882.1 dr1-associated corepressor homolog isoform X1 [Momordica charantia]

1.5e-30

48.75

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL +++HC TA+E+W  L  ++ SR+LA++M++K KL+NI+KG   + +Y  K+K  +D+LAA GK V VEDHIM+IL GL SE+E  V VI+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN
         TQ +Q+V +LLL+HE R E +NSIN DG LP+ NL  Q +    N +Q +  Q+   QN
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN

XP_022136883.1 dr1-associated corepressor homolog isoform X2 [Momordica charantia]

1.5e-30

48.75

Show/hide

Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL +++HC TA+E+W  L  ++ SR+LA++M++K KL+NI+KG   + +Y  K+K  +D+LAA GK V VEDHIM+IL GL SE+E  V VI+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN
         TQ +Q+V +LLL+HE R E +NSIN DG LP+ NL  Q +    N +Q +  Q+   QN
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN

XP_022158089.1 uncharacterized protein LOC111024658 [Momordica charantia]

1.8e-28

44.83

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL  +LHC+TAKEIW  L Q+F +++L ++M++K +LQN++KGG S+ EY+ +IK  +D+L A GK++  EDHIM+IL+GLGSEYE  V VIT K 
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLI-------NQKQQQQNFGNNRGR
            +QDV ALLL+H+ RIE + S   D  LP+A++ + ++   +N+    +       ++ QQ  +  NNRGR
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLI-------NQKQQQQNFGNNRGR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUB3 Putative glutathione S-transferase isoform X1

6.0e-30

52.48

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL Q+LHCT+AK+IW  L  I++SR+LA+ M+ K KL N++KG  S+ EY  KI++C+DALA+I K +  +DHI+YILAGLG+EY+ ++ VI+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR
         + +VQDV++LLLT ES+IESK  I ++  LPT N+    R
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon

3.9e-29

49.01

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M+E IL Q+LH T+AK+IW  L  I++SR+LA+ M+ K KL N++KG  S+ EY  KI++C+DALA+I K +  +DHI+YILAGLG+EY+ I+ +I+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR----IQKEND
         + +VQD ++LLLT ES+IESK  I ++  LPT N+    R    ++KE++
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNR----IQKEND

A0A6J1C6N9 dr1-associated corepressor homolog isoform X1

7.1e-31

48.75

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL +++HC TA+E+W  L  ++ SR+LA++M++K KL+NI+KG   + +Y  K+K  +D+LAA GK V VEDHIM+IL GL SE+E  V VI+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN
         TQ +Q+V +LLL+HE R E +NSIN DG LP+ NL  Q +    N +Q +  Q+   QN
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN

A0A6J1C8R2 dr1-associated corepressor homolog isoform X2

7.1e-31

48.75

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Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL +++HC TA+E+W  L  ++ SR+LA++M++K KL+NI+KG   + +Y  K+K  +D+LAA GK V VEDHIM+IL GL SE+E  V VI+A+T
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN
         TQ +Q+V +LLL+HE R E +NSIN DG LP+ NL  Q +    N +Q +  Q+   QN
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQN

A0A6J1DYD5 uncharacterized protein LOC111024658

8.7e-29

44.83

Show/hide

Query:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT
        M E IL  +LHC+TAKEIW  L Q+F +++L ++M++K +LQN++KGG S+ EY+ +IK  +D+L A GK++  EDHIM+IL+GLGSEYE  V VIT K 
Subjt:  MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKT

Query:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLI-------NQKQQQQNFGNNRGR
            +QDV ALLL+H+ RIE + S   D  LP+A++ + ++   +N+    +       ++ QQ  +  NNRGR
Subjt:  STQNVQDVIALLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLI-------NQKQQQQNFGNNRGR

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.5e-06

26.58

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Query:  VLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDV
        V   TTA +IW  L +I+ +     + +++ +L+   KG  ++++Y+  +    D LA +GK +  ++ +  +L  L  EY+ ++  I AK +   + ++
Subjt:  VLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDV

Query:  IALLLTHESRIESKNSINADGVLP-TANLIV-QNRIQKENDSQKLINQKQQQQNFGNN
           LL HES+I + +S     V+P TAN +  +N     N++    N +   +N  NN
Subjt:  IALLLTHESRIESKNSINADGVLP-TANLIV-QNRIQKENDSQKLINQKQQQQNFGNN

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.1e-04

24.07

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Query:  TTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALL
        +T+++IW  +   F +   A+ +++  +L+    G   + +Y  K+KK  D+L  +   V   + +MY+L GL  +++ I+ VI  +    +  D   +L
Subjt:  TTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIALL

Query:  LTHESRIE
           E R++
Subjt:  LTHESRIE

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.3e-05

24.12

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Query:  MTETILEQVLHC-TTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAK
        +T+++L+ ++    TA+++W  L  +F     A+ ++ + +L+       S++EY  K+K   D L  +   +     +M++L GL  +Y+ I+ VI  K
Subjt:  MTETILEQVLHC-TTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAK

Query:  TSTQNVQDVIALLLTHESRI--ESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQNFGNNRGR
        +   +  +  ++LL  ESR+  +SK+S++       +N++     Q+E   Q+  N      N G  R +
Subjt:  TSTQNVQDVIALLLTHESRI--ESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQNFGNNRGR

Sequences

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CDS sequence

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ATGACTGAAACGATCTTAGAACAAGTTTTACACTGTACCACTGCAAAAGAAATTTGGTCATATCTTCTTCAGATTTTTAATTCTAGACACCTAGCACAGATAATGAAGAT
TAAAGTCAAATTACAGAATATACAAAAAGGAGGATCGTCTATGAATGAGTATGTATCGAAAATTAAAAAATGCATTGATGCCCTAGCTGCAATAGGAAAAACAGTCCTTG
TGGAAGATCATATTATGTATATTTTGGCTGGATTGGGATCTGAATATGAAATAATAGTTTATGTTATTACTGCCAAGACTAGTACTCAAAATGTGCAAGATGTTATTGCT
TTATTACTAACACATGAGAGTAGAATCGAAAGCAAAAATTCAATCAATGCAGATGGAGTCCTTCCTACAGCAAATCTTATAGTACAAAATCGTATTCAGAAGGAAAATGA
TTCTCAGAAATTGATAAATCAGAAGCAACAACAGCAAAATTTTGGTAATAATAGAGGTAGATGA

mRNA sequence

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Protein sequence

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MTETILEQVLHCTTAKEIWSYLLQIFNSRHLAQIMKIKVKLQNIQKGGSSMNEYVSKIKKCIDALAAIGKTVLVEDHIMYILAGLGSEYEIIVYVITAKTSTQNVQDVIA
LLLTHESRIESKNSINADGVLPTANLIVQNRIQKENDSQKLINQKQQQQNFGNNRGR

Lag0036293 (gene) of Sponge gourd (AG-4) v1 genome