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Lag0036317 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036317
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase, catalytic core
Genome locationchr3:43879720..43880169
RNA-Seq ExpressionLag0036317
SyntenyLag0036317
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032606.1 Integrase, catalytic core [Cucumis melo var. makuwa]3.8e-0743.37Show/hide
Query:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNL------------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTST
        M AM+ + N N D NWYPDS+ATNHL N+  NL             D+ TG  L QG LH GLY+FN   S    T+++  S+
Subjt:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNL------------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTST

XP_017613890.1 PREDICTED: uncharacterized protein LOC108459030 [Gossypium arboreum]6.7e-0442.19Show/hide
Query:  WYPDSSATNHLTNSLGNL------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTSTPY
        WYPDS A+NH+T+ LGNL      +D  TG +L  G++H GLY+F+ S++   S S    +T +
Subjt:  WYPDSSATNHLTNSLGNL------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTSTPY

TrEMBL top hitse value%identityAlignment
A0A5A7VFQ6 Retrotransposon protein, putative, Ty1-copia subclass5.5e-0434.71Show/hide
Query:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNLS----------------------------------------------DQATGWVLPQGTLHEGLYKF
        M AM+ T + N D NWYPDS ATNHLT+SL NLS                                              D  TG VL QG L++GLYKF
Subjt:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNLS----------------------------------------------DQATGWVLPQGTLHEGLYKF

Query:  --NPSQSPSHSTSDLHTSTPY
           PS    H  SD +T + +
Subjt:  --NPSQSPSHSTSDLHTSTPY

A0A5D3B9Z0 Putative copia-like retrotransposon Hopscotch polyprotein7.2e-0432.38Show/hide
Query:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNLS---------------------------------DQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDL
        M AM+ + + N D NWYP+  ATNHL ++L NLS                                 DQ TG +L QG L++GLY+FN   S   S   +
Subjt:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNLS---------------------------------DQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDL

Query:  HTSTP
          + P
Subjt:  HTSTP

A0A5D3DC66 Integrase, catalytic core1.8e-0743.37Show/hide
Query:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNL------------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTST
        M AM+ + N N D NWYPDS+ATNHL N+  NL             D+ TG  L QG LH GLY+FN   S    T+++  S+
Subjt:  MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNL------------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTST

A0A6P4MSE1 uncharacterized protein LOC1084590303.2e-0442.19Show/hide
Query:  WYPDSSATNHLTNSLGNL------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTSTPY
        WYPDS A+NH+T+ LGNL      +D  TG +L  G++H GLY+F+ S++   S S    +T +
Subjt:  WYPDSSATNHLTNSLGNL------SDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTSTPY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCAATGATGGAAACCAAGAATTTTAACCAGGATTGTAATTGGTATCCCGATTCAAGTGCTACAAATCATTTGACAAATAGCCTTGGGAATCTATCAGATCAAGC
AACTGGATGGGTTCTTCCCCAAGGGACTCTTCATGAGGGACTATACAAGTTCAATCCGTCACAATCTCCATCTCATTCCACCTCTGATTTGCATACATCTACTCCATATT
AG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCAATGATGGAAACCAAGAATTTTAACCAGGATTGTAATTGGTATCCCGATTCAAGTGCTACAAATCATTTGACAAATAGCCTTGGGAATCTATCAGATCAAGC
AACTGGATGGGTTCTTCCCCAAGGGACTCTTCATGAGGGACTATACAAGTTCAATCCGTCACAATCTCCATCTCATTCCACCTCTGATTTGCATACATCTACTCCATATT
AG
Protein sequenceShow/hide protein sequence
MPAMMETKNFNQDCNWYPDSSATNHLTNSLGNLSDQATGWVLPQGTLHEGLYKFNPSQSPSHSTSDLHTSTPY