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Lag0036338 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036338
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:44553853..44554281
RNA-Seq ExpressionLag0036338
SyntenyLag0036338
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8733199.1 hypothetical protein F3Y22_tig00001478pilonHSYRG00382 [Hibiscus syriacus]2.5e-0734.55Show/hide
Query:  SPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHTLARMAISLSSSMLWIENYPQ
        SP  AEA+A S  LRLA++++  RL +   +L VI  IN   + +S+I   I +I+E  +SFE++ F ++ R+ N   H LA +  + ++ M+WIE  P 
Subjt:  SPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHTLARMAISLSSSMLWIENYPQ

Query:  WMVSLSLQER
         M   +++++
Subjt:  WMVSLSLQER

RYE02783.1 reverse transcriptase-like protein, partial [Rickettsiaceae bacterium]1.3e-0634.45Show/hide
Query:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT
        +RD  GE+ A+Q+L  A   SP  AEA AV  G+ L + +   R  I S  L V+R I++ +   + + T +  I    +  E+ R  +I+R  N  AH 
Subjt:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT

Query:  LARMAISLSSSMLWIENYP
        LAR A++  SS  W+   P
Subjt:  LARMAISLSSSMLWIENYP

TXG67779.1 hypothetical protein EZV62_009054 [Acer yangbiense]1.1e-0733.33Show/hide
Query:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT
        +RD  G +    +LV    +S   AEA A+ +G+ LA    +  L+I S SLNV+R  N EI  ++++   I DI+        +  +YI R  N  AH 
Subjt:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT

Query:  LARMAISLSSSMLWIENYPQWMVSLSLQE
        +AR AI L +S++  + YP W+  ++L +
Subjt:  LARMAISLSSSMLWIENYPQWMVSLSLQE

TXG71894.1 hypothetical protein EZV62_000473 [Acer yangbiense]2.5e-0734.11Show/hide
Query:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT
        +RD  G +  + +LV    +S   AEA  + +GL LA    +  L+I S SLNV+R  N EI  ++++   I DI+           +YI R  N  AH 
Subjt:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT

Query:  LARMAISLSSSMLWIENYPQWMVSLSLQE
        +AR AI L +S++  + YP W+  L+L +
Subjt:  LARMAISLSSSMLWIENYPQWMVSLSLQE

XP_030923260.1 uncharacterized protein LOC115950147 [Quercus lobata]9.6e-0733.6Show/hide
Query:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT
        +RD FG++    S     C +   +E +A+  G+ LA+E+ + R+ I S S N I+ + D+    S+    +  I +AC+SFE   F +++R FN  AH 
Subjt:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT

Query:  LARMAISLSSSMLWIENYPQWMVSL
        LA  A    S  LWI   P  +VS+
Subjt:  LARMAISLSSSMLWIENYPQWMVSL

TrEMBL top hitse value%identityAlignment
A0A2P6QJ46 Putative ribonuclease H-like domain-containing protein1.4e-0630.33Show/hide
Query:  RDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHTL
        RD FG L+   ++      SP   EA+A+  GLR A  +  GRL I   +L++I ++  E    S     + +++   +SFE     ++ R  N  AH L
Subjt:  RDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHTL

Query:  ARMAISLSSSMLWIENYPQWMV
        A+ A+ +S   L +E+ P W++
Subjt:  ARMAISLSSSMLWIENYPQWMV

A0A4Q3DBE2 Reverse transcriptase-like protein (Fragment)6.1e-0734.45Show/hide
Query:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT
        +RD  GE+ A+Q+L  A   SP  AEA AV  G+ L + +   R  I S  L V+R I++ +   + + T +  I    +  E+ R  +I+R  N  AH 
Subjt:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT

Query:  LARMAISLSSSMLWIENYP
        LAR A++  SS  W+   P
Subjt:  LARMAISLSSSMLWIENYP

A0A5C7IFK3 RNase H domain-containing protein5.5e-0833.33Show/hide
Query:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT
        +RD  G +    +LV    +S   AEA A+ +G+ LA    +  L+I S SLNV+R  N EI  ++++   I DI+        +  +YI R  N  AH 
Subjt:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT

Query:  LARMAISLSSSMLWIENYPQWMVSLSLQE
        +AR AI L +S++  + YP W+  ++L +
Subjt:  LARMAISLSSSMLWIENYPQWMVSLSLQE

A0A5C7IST2 RNase H domain-containing protein1.2e-0734.11Show/hide
Query:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT
        +RD  G +  + +LV    +S   AEA  + +GL LA    +  L+I S SLNV+R  N EI  ++++   I DI+           +YI R  N  AH 
Subjt:  MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHT

Query:  LARMAISLSSSMLWIENYPQWMVSLSLQE
        +AR AI L +S++  + YP W+  L+L +
Subjt:  LARMAISLSSSMLWIENYPQWMVSLSLQE

A0A6A3D1Q4 RNase H domain-containing protein1.2e-0734.55Show/hide
Query:  SPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHTLARMAISLSSSMLWIENYPQ
        SP  AEA+A S  LRLA++++  RL +   +L VI  IN   + +S+I   I +I+E  +SFE++ F ++ R+ N   H LA +  + ++ M+WIE  P 
Subjt:  SPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHTLARMAISLSSSMLWIENYPQ

Query:  WMVSLSLQER
         M   +++++
Subjt:  WMVSLSLQER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGATAGGTTTGGAGAGCTCAGGGCTACTCAGTCTTTAGTGGCGGCGGCTTGTTCTTCCCCATTGGGCGCAGAAGCGGTTGCAGTTTCAGATGGCCTACGGCTGGC
CAAGGAGATGAATGTGGGTCGGTTGACGATTTTATCTTACTCGTTGAACGTGATAAGGACGATCAATGATGAAATCCAATGTCAGTCTAATATTGCTACTACCATCTGGG
ATATTAGAGAAGCGTGCAAGTCTTTCGAGATAGTTCGATTTACATATATTAATCGTAGATTTAATTGTTTTGCTCACACACTGGCTAGGATGGCCATTTCGCTTTCGTCA
TCTATGTTGTGGATAGAAAACTATCCTCAATGGATGGTTAGTTTATCGCTCCAGGAGCGAGAACTGTTTGTTTCCTGTCGGGTATTACTGGATTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGATAGGTTTGGAGAGCTCAGGGCTACTCAGTCTTTAGTGGCGGCGGCTTGTTCTTCCCCATTGGGCGCAGAAGCGGTTGCAGTTTCAGATGGCCTACGGCTGGC
CAAGGAGATGAATGTGGGTCGGTTGACGATTTTATCTTACTCGTTGAACGTGATAAGGACGATCAATGATGAAATCCAATGTCAGTCTAATATTGCTACTACCATCTGGG
ATATTAGAGAAGCGTGCAAGTCTTTCGAGATAGTTCGATTTACATATATTAATCGTAGATTTAATTGTTTTGCTCACACACTGGCTAGGATGGCCATTTCGCTTTCGTCA
TCTATGTTGTGGATAGAAAACTATCCTCAATGGATGGTTAGTTTATCGCTCCAGGAGCGAGAACTGTTTGTTTCCTGTCGGGTATTACTGGATTATTAA
Protein sequenceShow/hide protein sequence
MRDRFGELRATQSLVAAACSSPLGAEAVAVSDGLRLAKEMNVGRLTILSYSLNVIRTINDEIQCQSNIATTIWDIREACKSFEIVRFTYINRRFNCFAHTLARMAISLSS
SMLWIENYPQWMVSLSLQERELFVSCRVLLDY