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Lag0036340 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036340
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPol protein
Genome locationchr3:44655643..44663685
RNA-Seq ExpressionLag0036340
SyntenyLag0036340
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.0e-0568.42Show/hide
Query:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFR
        GESGQ  +SI L F GQDR+GSWEHN  RWN L+P FR
Subjt:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.1e-0763.64Show/hide
Query:  ESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFREADECSL
        ESGQ A+S+ L FWGQDR+ SWEHN  RWNSL+P FRE  + S+
Subjt:  ESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFREADECSL

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-0771.79Show/hide
Query:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFRE
        GESGQ  +SI L FWGQDR+GSWEHN  RWNS IP FR+
Subjt:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFRE

TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.0e-0654.39Show/hide
Query:  PDFREADECSLKWLLRVLNKGLYPLNGTREFLFDGWTTNRLFIRGELVLKEIETLKT
        P     D+CSL+W +R LNK  YPL    EFLF GWT NRLFIRG L  K I + K+
Subjt:  PDFREADECSLKWLLRVLNKGLYPLNGTREFLFDGWTTNRLFIRGELVLKEIETLKT

TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]8.2e-0472.41Show/hide
Query:  ISLPFWGQDRMGSWEHNRARWNSLIPDFR
        + L  WGQD++GSWEHN  RWNSLIPDFR
Subjt:  ISLPFWGQDRMGSWEHNRARWNSLIPDFR

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein9.5e-0668.42Show/hide
Query:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFR
        GESGQ  +SI L F GQDR+GSWEHN  RWN L+P FR
Subjt:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFR

A0A5A7U2P4 Integrase catalytic domain-containing protein1.0e-0763.64Show/hide
Query:  ESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFREADECSL
        ESGQ A+S+ L FWGQDR+ SWEHN  RWNSL+P FRE  + S+
Subjt:  ESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFREADECSL

A0A5D3C3J6 Gag/pol protein1.0e-0771.79Show/hide
Query:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFRE
        GESGQ  +SI L FWGQDR+GSWEHN  RWNS IP FR+
Subjt:  GESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFRE

A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-945.0e-0754.39Show/hide
Query:  PDFREADECSLKWLLRVLNKGLYPLNGTREFLFDGWTTNRLFIRGELVLKEIETLKT
        P     D+CSL+W +R LNK  YPL    EFLF GWT NRLFIRG L  K I + K+
Subjt:  PDFREADECSLKWLLRVLNKGLYPLNGTREFLFDGWTTNRLFIRGELVLKEIETLKT

A0A5D3E3M6 Uncharacterized protein4.0e-0472.41Show/hide
Query:  ISLPFWGQDRMGSWEHNRARWNSLIPDFR
        + L  WGQD++GSWEHN  RWNSLIPDFR
Subjt:  ISLPFWGQDRMGSWEHNRARWNSLIPDFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAGTACGCCAACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGCAAGATGGAATTCACTCATTCCCGA
CTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGCTCTATCCTCTCAATGGCACGAGAGAGTTTTTGTTTGATGGTTGGACCACAA
ACAGGTTGTTCATTAGAGGAGAACTGGTACTTAAGGAAATAGAGACTCTCAAGACAAGACCTAGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTT
TGCCTCCTAGACCTAGAGTCATACCGGTGTAACCTCTGTGGTTATTGTGTCATTCAAGAAGAATTTTCCAGCGATCACGAGACAAAGGAGGTTGCTGCGTTTTGTTCGTT
GGAGCATCGTTGGCGAAGAACGGTCAAGTCTACAACGGAGTGCCCTAACTCCCCCTTTATTTCATCTTCTTCATTTTCTTCTCCTTCTTTTTCTCCCGACAGCCATCAAC
ACCGCCAACGTTGCCCGCCGTCTAGCGCCTTTCGACTAGTCGCCTGCCCCGCCGTCACCAACTTCTTTCAACGCTGCCCACCAACTCCTCAAAATCTCTGCGTATCTTTA
TGCTGCATTCAGAGTTTATATCTTGATCGAGGTAGATATATCTATAGCTACCAAGATTACTACATTTTTTGGTACGAGTATTTGATATCGATGGCTAACATGATCTTTAT
ACTACTAAGTGAAGTTGACCCTAAAGAAGAGATTGATGACCTCTTGACTTTAGGAGAATCCTTTGTTGATGGTTCTTTTTCTTTTAGCAAGGTTGGAATTGAGATATTGG
GAAAATTGAGGCGAGCTAAACTGCCATACATGGCCCTTGCAGCTTCATTGTGTGAGTCACTTAGTTCCATGGTTTGTACTGACCTACCATCAAATTTTGTAGGTGATGAG
AATTACTACGAACCGGGTGATGTTGAGGACGAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAGTACGCCAACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGCAAGATGGAATTCACTCATTCCCGA
CTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGCTCTATCCTCTCAATGGCACGAGAGAGTTTTTGTTTGATGGTTGGACCACAA
ACAGGTTGTTCATTAGAGGAGAACTGGTACTTAAGGAAATAGAGACTCTCAAGACAAGACCTAGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTT
TGCCTCCTAGACCTAGAGTCATACCGGTGTAACCTCTGTGGTTATTGTGTCATTCAAGAAGAATTTTCCAGCGATCACGAGACAAAGGAGGTTGCTGCGTTTTGTTCGTT
GGAGCATCGTTGGCGAAGAACGGTCAAGTCTACAACGGAGTGCCCTAACTCCCCCTTTATTTCATCTTCTTCATTTTCTTCTCCTTCTTTTTCTCCCGACAGCCATCAAC
ACCGCCAACGTTGCCCGCCGTCTAGCGCCTTTCGACTAGTCGCCTGCCCCGCCGTCACCAACTTCTTTCAACGCTGCCCACCAACTCCTCAAAATCTCTGCGTATCTTTA
TGCTGCATTCAGAGTTTATATCTTGATCGAGGTAGATATATCTATAGCTACCAAGATTACTACATTTTTTGGTACGAGTATTTGATATCGATGGCTAACATGATCTTTAT
ACTACTAAGTGAAGTTGACCCTAAAGAAGAGATTGATGACCTCTTGACTTTAGGAGAATCCTTTGTTGATGGTTCTTTTTCTTTTAGCAAGGTTGGAATTGAGATATTGG
GAAAATTGAGGCGAGCTAAACTGCCATACATGGCCCTTGCAGCTTCATTGTGTGAGTCACTTAGTTCCATGGTTTGTACTGACCTACCATCAAATTTTGTAGGTGATGAG
AATTACTACGAACCGGGTGATGTTGAGGACGAGGTCTGA
Protein sequenceShow/hide protein sequence
MGESGQYANSISLPFWGQDRMGSWEHNRARWNSLIPDFREADECSLKWLLRVLNKGLYPLNGTREFLFDGWTTNRLFIRGELVLKEIETLKTRPRILSSLPLRERLPQVF
CLLDLESYRCNLCGYCVIQEEFSSDHETKEVAAFCSLEHRWRRTVKSTTECPNSPFISSSSFSSPSFSPDSHQHRQRCPPSSAFRLVACPAVTNFFQRCPPTPQNLCVSL
CCIQSLYLDRGRYIYSYQDYYIFWYEYLISMANMIFILLSEVDPKEEIDDLLTLGESFVDGSFSFSKVGIEILGKLRRAKLPYMALAASLCESLSSMVCTDLPSNFVGDE
NYYEPGDVEDEV