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Lag0036368 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036368
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:45253406..45254685
RNA-Seq ExpressionLag0036368
SyntenyLag0036368
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]1.7e-1443.16Show/hide
Query:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVKQYGEWMRA
        +G ++GE +EV+ DE+       LR+KVK++IT+ L RG MV+I  +  ++W    YE LP FCY CG   HV++EC  +V  +E  Q+G W+RA
Subjt:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVKQYGEWMRA

KAF5477665.1 hypothetical protein F2P56_004284, partial [Juglans regia]4.2e-1345.26Show/hide
Query:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVKQYGEWMRA
        +GNSLG F +V +DE        LRI+V++DIT+ L RGL + +  K  +TWV   YERLP  C++CG   HVK  C  +   E   QYG W+RA
Subjt:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVKQYGEWMRA

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]6.9e-1633.52Show/hide
Query:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEE---VSLEEVKQYG
        +T+ A  LG  LG+ EE++ D  D      +R++VKID+++ L+RG+ ++  S  ++ W    YE+LP+FCYECGK GH  +ECE+    V+    +QYG
Subjt:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEE---VSLEEVKQYG

Query:  EWMRATPILGGSNKKKTLENRGEQLWGRGRGRRAGFQGNRYHWRGGRAFSASWRRNKNYQNQLEATGRSPEGQQEEEDKLDK
        +W+RAT +      KK++ +  E+++ RG     G  G  +   GGR     WRR    +N  +  G     ++  E+ +D+
Subjt:  EWMRATPILGGSNKKKTLENRGEQLWGRGRGRRAGFQGNRYHWRGGRAFSASWRRNKNYQNQLEATGRSPEGQQEEEDKLDK

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]5.5e-1339.02Show/hide
Query:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVKQYGEWMRATPILG
        +G  +G F  +DLDE+D      LRIKV++DI + L RG+MV +G + +  W    YE LP+FCY CG  GH  + CE EV   E +Q+ +++R  P   
Subjt:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVKQYGEWMRATPILG

Query:  GSNKKKTLENRGEQLWGRGRGRR
           ++K +E   E   GR  G R
Subjt:  GSNKKKTLENRGEQLWGRGRGRR

XP_042988700.1 uncharacterized protein LOC122316232 [Carya illinoinensis]5.5e-1334.31Show/hide
Query:  VAGTTTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLE-EVKQ
        +AG + +    LG+SLGE EEV++D +D    + LR+++ +D+T+ L RG  +++  +  +TWV  TYE+LP FC +CG+  H + +C     ++ + KQ
Subjt:  VAGTTTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLE-EVKQ

Query:  YGEWMRATPILGGSNKKKTLENRGEQLWGRGRGRRAG
        +G W+RA    GG  +      RG+ + G+ R    G
Subjt:  YGEWMRATPILGGSNKKKTLENRGEQLWGRGRGRRAG

TrEMBL top hitse value%identityAlignment
A0A2N9E949 CCHC-type domain-containing protein2.0e-1340.54Show/hide
Query:  GTTTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVK----
        G   + AT++GN+LG  EE+D+ E+       +R++V+ID++  L R   V++G K E  WV   YE+LP FCY CG  GH ++EC      E+ K    
Subjt:  GTTTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVK----

Query:  -QYGEWMRATP
         +YG W+RATP
Subjt:  -QYGEWMRATP

A0A2N9G3M9 CCHC-type domain-containing protein2.0e-1340.54Show/hide
Query:  GTTTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVK----
        G   + AT++GN+LG  EE+D+ E+       +R++V+ID++  L R   V++G K E  WV   YE+LP FCY CG  GH ++EC      E+ K    
Subjt:  GTTTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEVK----

Query:  -QYGEWMRATP
         +YG W+RATP
Subjt:  -QYGEWMRATP

A0A2N9GB96 Uncharacterized protein5.9e-1338.32Show/hide
Query:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEE-----EVSLEEVKQ
        T   A  +G +LG+ E V   ++D  G N +R++V++D+T  L RG M+R+    +++WV   YERLP FCY CG   H +++C+E          E  Q
Subjt:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEE-----EVSLEEVKQ

Query:  YGEWMRA
        YG W+RA
Subjt:  YGEWMRA

A0A2N9H0J9 Uncharacterized protein5.9e-1338.32Show/hide
Query:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEE-----EVSLEEVKQ
        T   A  +G +LG+ E V   ++D  G N +R++V++D+T  L RG M+R+    +++WV   YERLP FCY CG   H +++C+E          E  Q
Subjt:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEE-----EVSLEEVKQ

Query:  YGEWMRA
        YG W+RA
Subjt:  YGEWMRA

A0A6J1D765 uncharacterized protein LOC1110179023.4e-1633.52Show/hide
Query:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEE---VSLEEVKQYG
        +T+ A  LG  LG+ EE++ D  D      +R++VKID+++ L+RG+ ++  S  ++ W    YE+LP+FCYECGK GH  +ECE+    V+    +QYG
Subjt:  TTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEE---VSLEEVKQYG

Query:  EWMRATPILGGSNKKKTLENRGEQLWGRGRGRRAGFQGNRYHWRGGRAFSASWRRNKNYQNQLEATGRSPEGQQEEEDKLDK
        +W+RAT +      KK++ +  E+++ RG     G  G  +   GGR     WRR    +N  +  G     ++  E+ +D+
Subjt:  EWMRATPILGGSNKKKTLENRGEQLWGRGRGRRAGFQGNRYHWRGGRAFSASWRRNKNYQNQLEATGRSPEGQQEEEDKLDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding6.9e-0631.4Show/hide
Query:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEV
        + ++LGE   +D +EE  + +  +R+KV++D TE L+    VR  S+ E   +   YE+L   C  C +  H    C   V  EE+
Subjt:  LGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETWVKATYERLPEFCYECGKAGHVKQECEEEVSLEEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCTTGCACAATTTACAGAGCATCACATGTGTCAGTGAAGGTGCTCGAGGCGCTCTCTCAGCTCTGGGTTAAGAGGAAGTCTGTGAGCAGGTTGGGCAACTCCAT
GTTGCGAATGGGATCCACCAGTGATCAGATAGTGGCTGGGACAACAACGAAATGGGCCACGACGTTGGGGAACTCGCTAGGCGAATTCGAAGAAGTGGATTTGGACGAAG
AAGACAATAACGGGGTCAACACTTTGAGAATAAAAGTAAAGATAGACATAACTGAACTGCTAAAACGAGGCCTGATGGTTAGGATAGGCTCTAAGGCAGAGGAAACATGG
GTAAAAGCTACGTACGAGAGGCTACCTGAATTTTGCTACGAGTGTGGTAAAGCAGGTCATGTAAAACAGGAATGCGAAGAAGAAGTCTCTCTTGAAGAAGTCAAGCAGTA
TGGTGAGTGGATGAGGGCCACCCCTATCTTAGGTGGATCAAACAAGAAGAAAACTCTCGAAAATAGAGGGGAGCAGTTATGGGGAAGAGGAAGAGGAAGAAGAGCAGGAT
TCCAAGGAAACAGGTACCATTGGAGAGGGGGAAGGGCGTTCAGTGCTTCATGGAGGAGAAATAAAAATTATCAGAATCAATTGGAGGCGACCGGTCGGTCACCGGAAGGG
CAGCAGGAAGAAGAAGATAAACTGGACAAAAATTTCGCATCCCAAGGCAATAAGTCACCAATGGCTAGTGTGTTGGGTTTTATGCCCTACAACTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCTTGCACAATTTACAGAGCATCACATGTGTCAGTGAAGGTGCTCGAGGCGCTCTCTCAGCTCTGGGTTAAGAGGAAGTCTGTGAGCAGGTTGGGCAACTCCAT
GTTGCGAATGGGATCCACCAGTGATCAGATAGTGGCTGGGACAACAACGAAATGGGCCACGACGTTGGGGAACTCGCTAGGCGAATTCGAAGAAGTGGATTTGGACGAAG
AAGACAATAACGGGGTCAACACTTTGAGAATAAAAGTAAAGATAGACATAACTGAACTGCTAAAACGAGGCCTGATGGTTAGGATAGGCTCTAAGGCAGAGGAAACATGG
GTAAAAGCTACGTACGAGAGGCTACCTGAATTTTGCTACGAGTGTGGTAAAGCAGGTCATGTAAAACAGGAATGCGAAGAAGAAGTCTCTCTTGAAGAAGTCAAGCAGTA
TGGTGAGTGGATGAGGGCCACCCCTATCTTAGGTGGATCAAACAAGAAGAAAACTCTCGAAAATAGAGGGGAGCAGTTATGGGGAAGAGGAAGAGGAAGAAGAGCAGGAT
TCCAAGGAAACAGGTACCATTGGAGAGGGGGAAGGGCGTTCAGTGCTTCATGGAGGAGAAATAAAAATTATCAGAATCAATTGGAGGCGACCGGTCGGTCACCGGAAGGG
CAGCAGGAAGAAGAAGATAAACTGGACAAAAATTTCGCATCCCAAGGCAATAAGTCACCAATGGCTAGTGTGTTGGGTTTTATGCCCTACAACTCGTAG
Protein sequenceShow/hide protein sequence
MRACTIYRASHVSVKVLEALSQLWVKRKSVSRLGNSMLRMGSTSDQIVAGTTTKWATTLGNSLGEFEEVDLDEEDNNGVNTLRIKVKIDITELLKRGLMVRIGSKAEETW
VKATYERLPEFCYECGKAGHVKQECEEEVSLEEVKQYGEWMRATPILGGSNKKKTLENRGEQLWGRGRGRRAGFQGNRYHWRGGRAFSASWRRNKNYQNQLEATGRSPEG
QQEEEDKLDKNFASQGNKSPMASVLGFMPYNS