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Lag0036379 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036379
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:45432635..45434352
RNA-Seq ExpressionLag0036379
SyntenyLag0036379
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7129225.1 hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]2.2e-0952.78Show/hide
Query:  LKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG
        L+T  G KL+L+DV+ VPNI++NLIS GKL D+GY  +FG  + KL   S VVA G + STLY  Q  ++KG
Subjt:  LKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG

KAG8364690.1 hypothetical protein BUALT_Bualt18G0024700 [Buddleja alternifolia]3.7e-0943.21Show/hide
Query:  EKSGKIGMSLKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG
        E  G   ++L+T+ G +L+LRDV+ +PNI++N+IS GKL DDGY+  FG  + KL   S + A G +K++LY  Q  ++ G
Subjt:  EKSGKIGMSLKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG

KAG8381469.1 hypothetical protein BUALT_Bualt06G0125100 [Buddleja alternifolia]1.3e-0935.78Show/hide
Query:  EKSGKIGMSLKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGSKRQWMPVKAADGSCRGEK
        E  G   ++L+T+ G +L+LRDV+ +P+I++N+IS GKL DDGY+  FG  + KL   S + A G +K++LY  Q N        +     + G C  E+
Subjt:  EKSGKIGMSLKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGSKRQWMPVKAADGSCRGEK

Query:  VDGYRESPI
         D   + P+
Subjt:  VDGYRESPI

PKI33847.1 hypothetical protein CRG98_045765 [Punica granatum]1.3e-0933.11Show/hide
Query:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNRQGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDKLVLRDVK
        MT+ +W+ LD + ++ IR+ LS +VA  +A E T     E+ +    +   ST  + L   + +D +   ++   +E +GK  + +KT  G    LR V+
Subjt:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNRQGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDKLVLRDVK

Query:  FVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLY
         +P++K N+I +G+L D+GY   FGS   K+   + VVA G +K TLY
Subjt:  FVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLY

VFQ81805.1 unnamed protein product [Cuscuta campestris]5.7e-1028.92Show/hide
Query:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNR-------QGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDK
        M+D DW  LD + +  +R+ L+  VA  + +ETT   LM+AL+N            K   +G    +  G D++        ++ +G   + LKT  G  
Subjt:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNR-------QGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDK

Query:  LVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGSKRQWMPVKAADGSCRGEKVDGYRESPIVRRSNELK
          L++V+ +P++K  LIS+G+L D G   +FG  Q K+   + VVA G ++ +LY  ++           P + A      EKV  ++ES +++R    K
Subjt:  LVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGSKRQWMPVKAADGSCRGEKVDGYRESPIVRRSNELK

Query:  KSLR
        + LR
Subjt:  KSLR

TrEMBL top hitse value%identityAlignment
A0A2I0HQ64 Uncharacterized protein6.1e-1033.11Show/hide
Query:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNRQGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDKLVLRDVK
        MT+ +W+ LD + ++ IR+ LS +VA  +A E T     E+ +    +   ST  + L   + +D +   ++   +E +GK  + +KT  G    LR V+
Subjt:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNRQGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDKLVLRDVK

Query:  FVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLY
         +P++K N+I +G+L D+GY   FGS   K+   + VVA G +K TLY
Subjt:  FVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLY

A0A2I0KAA2 gag_pre-integrs domain-containing protein4.4e-0833.33Show/hide
Query:  MTDEDWEALDEETVATIRMCLSMDVASLVAHE-TTAVKLMEALTNRQGSNKESTV---GSALVITKGKDKVDEE----------SESSSIEKSGKIGMSL
        MT+ +W+ LD + ++ IR+ LS +VA   A E TT  ++ +AL     S  ES V   G++       D ++            ++   +E +GK  + +
Subjt:  MTDEDWEALDEETVATIRMCLSMDVASLVAHE-TTAVKLMEALTNRQGSNKESTV---GSALVITKGKDKVDEE----------SESSSIEKSGKIGMSL

Query:  KTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLY
        KT  G    LR V+ +P +K NLIS+G L D+GY   FGS   K+   + VVA G +  TLY
Subjt:  KTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLY

A0A438JHW9 Retrovirus-related Pol polyprotein from transposon TNT 1-948.8e-0948.61Show/hide
Query:  LKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG
        L+T  G+KLVL+DV++VPNI +NLISIG+L D+G+   FG  + KL   S +VA G++ +TLY  +  + KG
Subjt:  LKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG

A0A484LZI6 Uncharacterized protein2.7e-1028.92Show/hide
Query:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNR-------QGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDK
        M+D DW  LD + +  +R+ L+  VA  + +ETT   LM+AL+N            K   +G    +  G D++        ++ +G   + LKT  G  
Subjt:  MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNR-------QGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDK

Query:  LVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGSKRQWMPVKAADGSCRGEKVDGYRESPIVRRSNELK
          L++V+ +P++K  LIS+G+L D G   +FG  Q K+   + VVA G ++ +LY  ++           P + A      EKV  ++ES +++R    K
Subjt:  LVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGSKRQWMPVKAADGSCRGEKVDGYRESPIVRRSNELK

Query:  KSLR
        + LR
Subjt:  KSLR

Q5MG99 Hypothetical retrotransposon8.8e-0931.96Show/hide
Query:  VATIRMCLSM----DVASLVAHETTAVKLMEA---LTNRQGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDKLVLRDVKFVPNIK
        VAT+R  L +    +V ++  HETT +    A   +T R+      T G    +  G D          ++ +G   + L+T  G KLVL++VK  P+I+
Subjt:  VATIRMCLSM----DVASLVAHETTAVKLMEA---LTNRQGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDKLVLRDVKFVPNIK

Query:  MNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGS---------KRQW------MPVKAADGSCRGEKVDGYRESPI
        +NLIS GKL DDG+ C FG    K+   S VVA G++ S LY  Q +V+  S            W      M VK  D   +  K+ G +E+ +
Subjt:  MNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGS---------KRQW------MPVKAADGSCRGEKVDGYRESPI

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-0638.37Show/hide
Query:  SSSIEKSGKIG-MSLKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG
        ++S  K   IG + +KT  G  LVL+DV+ VP+++MNLIS   L  DGY   F +++ +L   S V+A G  + TLY+    + +G
Subjt:  SSSIEKSGKIG-MSLKTECGDKLVLRDVKFVPNIKMNLISIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATGAAGATTGGGAAGCTCTAGATGAAGAGACAGTTGCAACGATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGAGACAACTGCAGTCAA
ATTGATGGAAGCACTTACAAACAGGCAGGGTAGTAATAAAGAGTCTACAGTAGGGTCAGCTTTGGTTATAACTAAGGGTAAAGATAAGGTTGATGAAGAAAGTGAATCGA
GTAGCATAGAAAAAAGTGGAAAAATAGGAATGAGCCTGAAGACAGAATGTGGAGATAAATTGGTACTGCGAGATGTCAAGTTCGTGCCTAATATCAAGATGAATCTTATT
TCTATTGGCAAGTTGGTAGATGATGGTTATATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCAGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACATT
GTACAAATGTCAGTTGAATGTTACCAAAGGTTCAAAGAGACAGTGGATGCCGGTTAAAGCTGCAGATGGTAGTTGTAGAGGAGAGAAAGTTGATGGCTATCGTGAATCCC
CAATCGTCAGGCGCTCGAATGAATTGAAGAAGTCGCTAAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAGTAGATCCTTGGAGT
TTGCCAAGATGTTTAGAGTTTTATTGCAGTGGGAGACGAGATCGCTGTTTTGTCTCCAAGTGGGAAATTGTTGGAGGTGGAGACAAACCACCGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGATGAAGATTGGGAAGCTCTAGATGAAGAGACAGTTGCAACGATAAGGATGTGTTTGTCAATGGATGTGGCAAGTCTAGTAGCCCATGAGACAACTGCAGTCAA
ATTGATGGAAGCACTTACAAACAGGCAGGGTAGTAATAAAGAGTCTACAGTAGGGTCAGCTTTGGTTATAACTAAGGGTAAAGATAAGGTTGATGAAGAAAGTGAATCGA
GTAGCATAGAAAAAAGTGGAAAAATAGGAATGAGCCTGAAGACAGAATGTGGAGATAAATTGGTACTGCGAGATGTCAAGTTCGTGCCTAATATCAAGATGAATCTTATT
TCTATTGGCAAGTTGGTAGATGATGGTTATATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCAGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACATT
GTACAAATGTCAGTTGAATGTTACCAAAGGTTCAAAGAGACAGTGGATGCCGGTTAAAGCTGCAGATGGTAGTTGTAGAGGAGAGAAAGTTGATGGCTATCGTGAATCCC
CAATCGTCAGGCGCTCGAATGAATTGAAGAAGTCGCTAAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAGTAGATCCTTGGAGT
TTGCCAAGATGTTTAGAGTTTTATTGCAGTGGGAGACGAGATCGCTGTTTTGTCTCCAAGTGGGAAATTGTTGGAGGTGGAGACAAACCACCGCCTTAG
Protein sequenceShow/hide protein sequence
MTDEDWEALDEETVATIRMCLSMDVASLVAHETTAVKLMEALTNRQGSNKESTVGSALVITKGKDKVDEESESSSIEKSGKIGMSLKTECGDKLVLRDVKFVPNIKMNLI
SIGKLVDDGYMCEFGSRQCKLKFRSQVVAVGHRKSTLYKCQLNVTKGSKRQWMPVKAADGSCRGEKVDGYRESPIVRRSNELKKSLRYFEPWSLPRRSEITVVVGVDPWS
LPRCLEFYCSGRRDRCFVSKWEIVGGGDKPPP