; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036385 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036385
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr3:45482141..45483724
RNA-Seq ExpressionLag0036385
SyntenyLag0036385
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043030.1 retrotransposon protein [Cucumis melo var. makuwa]7.0e-3751.83Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D + L+  LT   + Q Q ++ L  +++   R+  ++P    H+IRQL +FR+ HE DL C ++TR+DRRTFTILC LLRT   L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLH+LAHD+ NRVI+R  VRSGETVSRHFN VL  V+RL+  L+K    +TN C D RW  FE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]5.4e-3751.83Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D  +L  I+     +Q Q ++ +L +L   ++     P    H+IRQL +FR+ H  DL C ++TR+DRR F ILC LLRT   L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLHILAHD+ NRVI+R  +RSGET+SRHFN VL AV+RLH  LLK P+ V N C D RW WFE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

KAA0049910.1 retrotransposon protein [Cucumis melo var. makuwa]7.0e-3751.53Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D E L+ +LT   + Q Q ++ L  +++   R+  ++P    H+IRQL +F + HE DL C E+TR+DRRT TILC LLRT   L ST  VD+E+M AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFE
        FLH+ AHD+ NRVI+R  VR GETVS+HFN VL AV+RL+  L+K P  VTN C D RW +FE
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFE

KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-3751.83Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D  +L  I+     +Q Q ++ +L +L   ++     P    H+IRQL +FR+ H  DL CH++TR+DRR F ILC LLRT   L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLHIL HD+ NRVI+R  +RSGET+SRHFN VL AV+RLH  LLK P+ V N C D RW WFE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-3853.05Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D + LI +LT     Q Q ++ L  +++   R+ + +PP   H+IR+L +FR+ HE DL C ++TR+DRRTF ILC LLR    L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLH+LAHD+ NRVI+R  VRSGETVSRHFN VL AVLRL+  L+K P  VT+ C D RW  FE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

TrEMBL top hitse value%identityAlignment
A0A5A7TXW1 Retrotransposon protein3.4e-3751.83Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D  +L  I+     +Q Q ++ +L +L   ++     P    H+IRQL +FR+ H  DL C ++TR+DRR F ILC LLRT   L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLHILAHD+ NRVI+R  +RSGET+SRHFN VL AV+RLH  LLK P+ V N C D RW WFE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

A0A5A7U3Q8 Retrotransposon protein3.4e-3751.53Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D E L+ +LT   + Q Q ++ L  +++   R+  ++P    H+IRQL +F + HE DL C E+TR+DRRT TILC LLRT   L ST  VD+E+M AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFE
        FLH+ AHD+ NRVI+R  VR GETVS+HFN VL AV+RL+  L+K P  VTN C D RW +FE
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFE

A0A5A7U476 Retrotransposon protein2.6e-3751.83Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D  +L  I+     +Q Q ++ +L +L   ++     P    H+IRQL +FR+ H  DL C ++TR+DRR F ILC LLRT   L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLHILAHD+ NRVI+R  +RSGET+SRHFN VL AV+RLH  LLK P+ V N C D RW WFE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

A0A5A7U9H2 Retrotransposon protein1.2e-3751.83Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D  +L  I+     +Q Q ++ +L +L   ++     P    H+IRQL +FR+ H  DL CH++TR+DRR F ILC LLRT   L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLHIL HD+ NRVI+R  +RSGET+SRHFN VL AV+RLH  LLK P+ V N C D RW WFE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

A0A5A7UUT3 Retrotransposon protein1.8e-3853.05Show/hide
Query:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM
        +D + LI +LT     Q Q ++ L  +++   R+ + +PP   H+IR+L +FR+ HE DL C ++TR+DRRTF ILC LLR    L ST  VD+EEM AM
Subjt:  IDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAM

Query:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED
        FLH+LAHD+ NRVI+R  VRSGETVSRHFN VL AVLRL+  L+K P  VT+ C D RW  FE+
Subjt:  FLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.3e-0932.17Show/hide
Query:  RIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAMFLHILAHDMMNRVIRRHLVRSGETVSRHFNDV
        R   R+P  +   +     +R   +D  AC +  R+    FT LC +L+T   L+ T  + IEE  AMFL I  H+ + R +     R+ ETV R F +V
Subjt:  RIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAMFLHILAHDMMNRVIRRHLVRSGETVSRHFNDV

Query:  LDAVLRLHSVLLKSP
        L A   L    +++P
Subjt:  LDAVLRLHSVLLKSP

AT5G28730.1 unknown protein2.6e-0532.14Show/hide
Query:  HEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAMFLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRL
        + ++++C    R+    FT LC +L     L+S+  + ++E  A+FL I A +   R I      + ET+ R F+DVL A+ RL
Subjt:  HEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAMFLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRL

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)8.9e-1446.15Show/hide
Query:  CHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAMFLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRL
        C EN R+D+  F  LC LL+T G L  TN + IE   A+FL I+ H++  R ++     SGET+SRHFN+VL+AV+ +
Subjt:  CHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAMFLHILAHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGTCTAGACATAGACAGTGAAGACTTGATTGTCATACTTACTGTGATATGTGTCACTCAGTATCAATTTGTGGTCGCGTTGCTCGGGATATTACATTGTGGTAG
CAGAATAGATAATCGGTCCCCTCCTCACCTACCACATCAAATTAGACAACTAAAATTCTTCCGACTAAAACATGAGGATGACTTGGCGTGTCATGAGAATACACGCATCG
ATAGGAGAACGTTCACCATTCTATGCACCCTGTTACGAACGACAGGCAGATTGGAATCAACTAACTACGTGGACATTGAGGAGATGGCTGCCATGTTCCTCCACATCCTT
GCCCACGACATGATGAATAGAGTCATTCGACGCCATCTCGTGCGGTCTGGTGAGACCGTATCTAGGCACTTCAACGACGTCCTGGATGCGGTCCTCCGACTGCACTCAGT
ACTGCTGAAATCTCCTGAGTTGGTGACAAACACATGCATGGACGGGAGGTGGTCGTGGTTTGAGGACGAGGAAGGGCGAAATTGCCACCAACGTGCTCGTTGTTTGCTCC
CAAAATGGAGAGTTCATATTTGTCTTCCCAGGATGGGAAGGATCAACGTCGGACTCAAGGGTTCTTTGAGAAGCAGTTTCTCGGCCTACCAAGCTGAAGGGGTTTCAAAT
TGGGAGGATGGGGACATGATAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGTCTAGACATAGACAGTGAAGACTTGATTGTCATACTTACTGTGATATGTGTCACTCAGTATCAATTTGTGGTCGCGTTGCTCGGGATATTACATTGTGGTAG
CAGAATAGATAATCGGTCCCCTCCTCACCTACCACATCAAATTAGACAACTAAAATTCTTCCGACTAAAACATGAGGATGACTTGGCGTGTCATGAGAATACACGCATCG
ATAGGAGAACGTTCACCATTCTATGCACCCTGTTACGAACGACAGGCAGATTGGAATCAACTAACTACGTGGACATTGAGGAGATGGCTGCCATGTTCCTCCACATCCTT
GCCCACGACATGATGAATAGAGTCATTCGACGCCATCTCGTGCGGTCTGGTGAGACCGTATCTAGGCACTTCAACGACGTCCTGGATGCGGTCCTCCGACTGCACTCAGT
ACTGCTGAAATCTCCTGAGTTGGTGACAAACACATGCATGGACGGGAGGTGGTCGTGGTTTGAGGACGAGGAAGGGCGAAATTGCCACCAACGTGCTCGTTGTTTGCTCC
CAAAATGGAGAGTTCATATTTGTCTTCCCAGGATGGGAAGGATCAACGTCGGACTCAAGGGTTCTTTGAGAAGCAGTTTCTCGGCCTACCAAGCTGAAGGGGTTTCAAAT
TGGGAGGATGGGGACATGATAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGA
Protein sequenceShow/hide protein sequence
MDGLDIDSEDLIVILTVICVTQYQFVVALLGILHCGSRIDNRSPPHLPHQIRQLKFFRLKHEDDLACHENTRIDRRTFTILCTLLRTTGRLESTNYVDIEEMAAMFLHIL
AHDMMNRVIRRHLVRSGETVSRHFNDVLDAVLRLHSVLLKSPELVTNTCMDGRWSWFEDEEGRNCHQRARCLLPKWRVHICLPRMGRINVGLKGSLRSSFSAYQAEGVSN
WEDGDMITQEGIHSFPLLGEVDECSLKW