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Lag0036393 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036393
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:45699991..45700479
RNA-Seq ExpressionLag0036393
SyntenyLag0036393
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7821986.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]1.4e-0636.67Show/hide
Query:  SGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFS
        +G   IG V+ + +G  +    +K+     I+ +EA A+L G+K   + C  R I   IESDA  V+ +L     D+S L LV +EIL   S    + F+
Subjt:  SGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFS

Query:  SCNRLANPVAHRLARKAVNF
           R AN VAH LA   VNF
Subjt:  SCNRLANPVAHRLARKAVNF

PRQ54504.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]1.9e-0630.19Show/hide
Query:  SGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFS
        +G GGIG V+ D NG  +    +          +E +A+ AG+    +   Q  +++ IE+D A+V   L G+ EDLSE+  + ++       +P V   
Subjt:  SGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFS

Query:  SCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLPFWFAPPLYEGSCSGS
        S  R AN VAHRLA  A             S  Y   +W  + P      LYE SC+ +
Subjt:  SCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLPFWFAPPLYEGSCSGS

XP_010686140.1 PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]8.4e-0731.33Show/hide
Query:  AKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGI---KTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLP
        A  G+ G+G V  D+ GSI+     +I  NW   I EA+A+L G+   KT+G+        + IESD   V++ L  +E+  S   L+ D+I+       
Subjt:  AKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGI---KTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLP

Query:  FVEFSSCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLPF
         V +S   R+ N VAH LA               Q  E G   W  D P+
Subjt:  FVEFSSCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLPF

XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]3.2e-0630.07Show/hide
Query:  MAKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRI------SLQIESDAASVIKVLTGEEEDLSELKLVADEILRAS
        ++K   GG+G VV D+ G         +++ WG K L    I++ I+ + +    R +       L++ SD   VI++L G + + S  +L+  +IL  +
Subjt:  MAKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRI------SLQIESDAASVIKVLTGEEEDLSELKLVADEILRAS

Query:  SPLPFVEFSSCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLP
            FV FS C RL N VAH +A   ++ SL EE+           FW  D P
Subjt:  SPLPFVEFSSCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLP

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.8e-0735.09Show/hide
Query:  GGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFSSCN
        GGIGW++   +G I+  G + +     +K+LEA AIL G++ +    V R   L IE+D+A V  +L  + EDL++   V +EIL        + F+   
Subjt:  GGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFSSCN

Query:  RLANPVAHRLARKA
        R  N  AH LA++A
Subjt:  RLANPVAHRLARKA

TrEMBL top hitse value%identityAlignment
A0A2P6S796 Putative ribonuclease H-like domain-containing protein9.1e-0730.19Show/hide
Query:  SGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFS
        +G GGIG V+ D NG  +    +          +E +A+ AG+    +   Q  +++ IE+D A+V   L G+ EDLSE+  + ++       +P V   
Subjt:  SGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFS

Query:  SCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLPFWFAPPLYEGSCSGS
        S  R AN VAHRLA  A             S  Y   +W  + P      LYE SC+ +
Subjt:  SCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLPFWFAPPLYEGSCSGS

A0A6J1CP26 uncharacterized protein LOC1110134124.5e-0631.5Show/hide
Query:  AKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVE
        A +  GGIGW++ D  G +I    + I     I  LE  AI  G++ I     +    + +ESD+   I +L  + +D +E+  + +EI +    +  V 
Subjt:  AKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVE

Query:  FSSCNRLANPVAHRLARKAVNFSLEEE
            +R AN VAH LAR+A+   L EE
Subjt:  FSSCNRLANPVAHRLARKAVNFSLEEE

A0A6J1DNV9 uncharacterized protein LOC1110224031.8e-0735.09Show/hide
Query:  GGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFSSCN
        GGIGW++   +G I+  G + +     +K+LEA AIL G++ +    V R   L IE+D+A V  +L  + EDL++   V +EIL        + F+   
Subjt:  GGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFSSCN

Query:  RLANPVAHRLARKA
        R  N  AH LA++A
Subjt:  RLANPVAHRLARKA

A0A7C9A7V4 Uncharacterized protein1.4e-0730.4Show/hide
Query:  KSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRI-SLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVE
        + G+ G+G VV D NG +     +    NW ++ +EA A+L G++     C Q    +L++E+D+  V   L G+++ L+       + L   + +P + 
Subjt:  KSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRI-SLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVE

Query:  FSSCNRLANPVAHRLARKAVNFSLE
        FS  +R+ N VAH LAR A+    E
Subjt:  FSSCNRLANPVAHRLARKAVNFSLE

A0A803L9N8 Uncharacterized protein1.5e-0630.07Show/hide
Query:  MAKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRI------SLQIESDAASVIKVLTGEEEDLSELKLVADEILRAS
        ++K   GG+G VV D+ G         +++ WG K L    I++ I+ + +    R +       L++ SD   VI++L G + + S  +L+  +IL  +
Subjt:  MAKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRI------SLQIESDAASVIKVLTGEEEDLSELKLVADEILRAS

Query:  SPLPFVEFSSCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLP
            FV FS C RL N VAH +A   ++ SL EE+           FW  D P
Subjt:  SPLPFVEFSSCNRLANPVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAATCAGGAGTCGGAGGTATTGGTTGGGTAGTGCATGACTCGAATGGGTCCATAATTTGCTTTGGCATGCAGAAAATCGTTCTTAATTGGGGAATCAAAATCTT
GGAGGCAAAAGCCATTCTTGCTGGAATCAAAACTATAGGCATTACCTGTGTTCAGCGAAGGATCTCGCTGCAAATTGAATCGGATGCGGCGTCCGTGATCAAAGTGTTGA
CCGGAGAAGAAGAAGACTTATCGGAACTCAAGCTGGTCGCCGACGAGATTTTGAGGGCTTCTTCCCCCCTCCCTTTTGTTGAATTCTCTTCTTGTAATCGTCTTGCCAAC
CCAGTAGCCCACAGGTTGGCAAGAAAAGCTGTGAACTTTAGCTTGGAAGAAGAACAGGCGACTCCTCAATCGAAGGAGTATGGGCGATCTTTTTGGGCCCCTGATCTTCC
ATTTTGGTTTGCCCCTCCTCTTTATGAGGGCAGTTGTTCGGGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAATCAGGAGTCGGAGGTATTGGTTGGGTAGTGCATGACTCGAATGGGTCCATAATTTGCTTTGGCATGCAGAAAATCGTTCTTAATTGGGGAATCAAAATCTT
GGAGGCAAAAGCCATTCTTGCTGGAATCAAAACTATAGGCATTACCTGTGTTCAGCGAAGGATCTCGCTGCAAATTGAATCGGATGCGGCGTCCGTGATCAAAGTGTTGA
CCGGAGAAGAAGAAGACTTATCGGAACTCAAGCTGGTCGCCGACGAGATTTTGAGGGCTTCTTCCCCCCTCCCTTTTGTTGAATTCTCTTCTTGTAATCGTCTTGCCAAC
CCAGTAGCCCACAGGTTGGCAAGAAAAGCTGTGAACTTTAGCTTGGAAGAAGAACAGGCGACTCCTCAATCGAAGGAGTATGGGCGATCTTTTTGGGCCCCTGATCTTCC
ATTTTGGTTTGCCCCTCCTCTTTATGAGGGCAGTTGTTCGGGTAGTTAG
Protein sequenceShow/hide protein sequence
MAKSGVGGIGWVVHDSNGSIICFGMQKIVLNWGIKILEAKAILAGIKTIGITCVQRRISLQIESDAASVIKVLTGEEEDLSELKLVADEILRASSPLPFVEFSSCNRLAN
PVAHRLARKAVNFSLEEEQATPQSKEYGRSFWAPDLPFWFAPPLYEGSCSGS