CuGenDBv2

Gene ID	Lag0036410
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Replication factor C subunit 1
Genome location	chr3:46070464..46072023
RNA-Seq Expression	Lag0036410
Synteny	Lag0036410
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006281 - DNA repair (biological process) GO:0005634 - nucleus (cellular component) GO:0005663 - DNA replication factor C complex (cellular component) GO:0005773 - vacuole (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003689 - DNA clamp loader activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016844 - strictosidine synthase activity (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR003959 - ATPase, AAA-type, core IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022957868.1 replication factor C subunit 1 isoform X1 [Cucurbita moschata]

2.1e-42

79.83

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNAN+IKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

XP_022995017.1 replication factor C subunit 1 isoform X1 [Cucurbita maxima]

9.3e-43

80.67

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNANSIKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

XP_022995018.1 replication factor C subunit 1 isoform X2 [Cucurbita maxima]

9.3e-43

80.67

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNANSIKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

XP_023532343.1 replication factor C subunit 1 isoform X1 [Cucurbita pepo subsp. pepo]

1.6e-42

79.83

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNAN+IKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

XP_023532344.1 replication factor C subunit 1 isoform X2 [Cucurbita pepo subsp. pepo]

1.6e-42

79.83

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNAN+IKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DHR4 Replication factor C subunit 1

1.2e-40

76.92

Show/hide

Query:  KGKPPTSNSSV----KVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGISGS
        K +P  SN  +     VKQLHDWLAHWNENF D  SKKKGKKLNDS AKK V LCGGPGIGKTTS KLVS+MLGY+AIEVNASDNRGK+DAKIQKGISGS
Subjt:  KGKPPTSNSSV----KVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGISGS

Query:  NANSIKELLGNESLQLK
        NANSIKEL+ NESL  +
Subjt:  NANSIKELLGNESLQLK

A0A6J1H1H3 Replication factor C subunit 1

1.0e-42

79.83

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNAN+IKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

A0A6J1H397 Replication factor C subunit 1

1.0e-42

79.83

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNAN+IKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

A0A6J1JXK0 Replication factor C subunit 1

4.5e-43

80.67

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNANSIKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

A0A6J1K6Q0 Replication factor C subunit 1

4.5e-43

80.67

Show/hide

Query:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGPGIGKTTS KLVS+MLGYEAIEVNASDNRGK+DAKIQKGIS
Subjt:  EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESLQLK
        GSNANSIKEL+ N SL  +
Subjt:  GSNANSIKELLGNESLQLK

SwissProt top hits

e value

%identity

Alignment

O60182 Replication factor C subunit 1

1.9e-06

36.36

Show/hide

Query:  VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGK----------ADAKIQKGISGSNANSI
        V++L  WL  +++N     +K     L   G  K V L G PGIGKTT+  LV+K+ GY+ +E+NASD R K           D++   G  G+ AN +
Subjt:  VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGK----------ADAKIQKGISGSNANSI

P35600 Replication factor C subunit 1

1.3e-07

34.96

Show/hide

Query:  IEKHAGEKGKGKPPTSNSSVKVKQLHDWLAHWNENFLDGGSKKK----GKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADA
        ++KH     K     + ++  V +L +WL+ W  N  DG  K +      K +D    K   L G PGIGKTT+  LV K LG++A+E NASD R K   
Subjt:  IEKHAGEKGKGKPPTSNSSVKVKQLHDWLAHWNENFLDGGSKKK----GKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADA

Query:  KIQKGISGSNANSIKELLGNESL
        K          + +  LL N+SL
Subjt:  KIQKGISGSNANSIKELLGNESL

P38630 Replication factor C subunit 1

2.2e-07

47.22

Show/hide

Query:  VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGK
        V +L +WLA+W EN      K  GK  + SG  +   L G PGIGKTT+  LV++ LGY+ +E NASD R K
Subjt:  VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGK

Q2R2B4 Replication factor C subunit 1

3.2e-30

60.87

Show/hide

Query:  EKGKGKPPTS--NSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGISG
        EK + K P     +   VKQLHDWL  W + FL  G K KGKK  DSGAKK V L G PGIGKTT+ K+VS+MLG +AIEVNASD+RGKAD+KI+KG+ G
Subjt:  EKGKGKPPTS--NSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGISG

Query:  SNANSIKELLGNESL
        S +NSIKEL+ N +L
Subjt:  SNANSIKELLGNESL

Q9C587 Replication factor C subunit 1

1.3e-31

62.07

Show/hide

Query:  EKGKGKPP---TSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK + K P     N S+ V QLH+WL+HW++ F   GSK KGKKLND+G+KK V L G PGIGKTTS KLVS+MLG++A+EVNASD+RGKA++ I KGI 
Subjt:  EKGKGKPP---TSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESL
        GSNANS+KEL+ NE++
Subjt:  GSNANSIKELLGNESL

Arabidopsis top hits

e value

%identity

Alignment

AT1G04730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.2e-05

26.81

Show/hide

Query:  LEEDKEKLEILLSTAQGEVMLLSDQIGYLVEE--EEIEKHAGEKGKGKPPTSNSSVKVKQLHDWLAH----------WNENFLD-GGSKKKGKKLNDSGA
        L +++   E+LL   Q +  +   +I    E     +++H+      K  + ++  + KQ + W              N N  D      K  KL     
Subjt:  LEEDKEKLEILLSTAQGEVMLLSDQIGYLVEE--EEIEKHAGEKGKGKPPTSNSSVKVKQLHDWLAH----------WNENFLD-GGSKKKGKKLNDSGA

Query:  KKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNR
        +K++ LCG PG+GKTT   + +K  GY  +E+NASD R
Subjt:  KKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNR

AT5G22010.1 replication factor C1

9.3e-33

62.07

Show/hide

Query:  EKGKGKPP---TSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS
        EK + K P     N S+ V QLH+WL+HW++ F   GSK KGKKLND+G+KK V L G PGIGKTTS KLVS+MLG++A+EVNASD+RGKA++ I KGI 
Subjt:  EKGKGKPP---TSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGIS

Query:  GSNANSIKELLGNESL
        GSNANS+KEL+ NE++
Subjt:  GSNANSIKELLGNESL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGGAGGTTCTGGTCGAGTCGGCCATAGGGGATTTAATTGGAGAAACAGAGTTGTCCGTTGGCGAGTTATTGTTGACAAATATCGGGCATGAATGTGTCGAAGGCTT
CTACATTTGTCGCAAAGCGGAAAAAATCAAGGCTCTCGAGGAAGACAAGGAAAAACTCGAGATCCTCCTCTCCACAGCTCAAGGGGAGGTCATGTTGTTGTCGGATCAAA
TCGGTTATCTTGTGGAGGAGGAAGAAATAGAGAAACATGCTGGAGAGAAAGGGAAAGGGAAACCACCGACTAGCAATTCCTCTGTGAAGGTCAAACAACTTCATGATTGG
TTGGCACATTGGAATGAAAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGTTGTCTCGTTATGTGGAGGTCCTGGCAT
AGGTAAAACTACATCGACTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGCGATAATCGGGGTAAAGCAGATGCAAAAATTCAAAAGGGAA
TCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTCTTGGCAATGAATCTTTGCAATTAAAATGGATCAATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEEVLVESAIGDLIGETELSVGELLLTNIGHECVEGFYICRKAEKIKALEEDKEKLEILLSTAQGEVMLLSDQIGYLVEEEEIEKHAGEKGKGKPPTSNSSVKVKQLHDW
LAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSTKLVSKMLGYEAIEVNASDNRGKADAKIQKGISGSNANSIKELLGNESLQLKWIN

Lag0036410 (gene) of Sponge gourd (AG-4) v1 genome