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Lag0036419 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036419
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:46225137..46225765
RNA-Seq ExpressionLag0036419
SyntenyLag0036419
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-0947.95Show/hide
Query:  PITYEKVLDFCYHCGRIGHVLQECDEGDSEGNEVKNYGVELRQNQGNKGINKNIQTLVNEGINF-RGRGRGKG
        P++YEK+ DFCY CGR+GHV+QEC E   +G E + +GV LR++Q ++ I+K  +  V       RGRG GKG
Subjt:  PITYEKVLDFCYHCGRIGHVLQECDEGDSEGNEVKNYGVELRQNQGNKGINKNIQTLVNEGINF-RGRGRGKG

TXG48431.1 hypothetical protein EZV62_027725 [Acer yangbiense]5.7e-0528.67Show/hide
Query:  GGPWSFDGSLLLFEEPEGRISINALEF----------------------RFVG-----------GKNDDLVNI------------------------SGE
        GGPWSFDG+L++ EEPEG+ +IN+L F                      +F+G           G + D +                           GE
Subjt:  GGPWSFDGSLLLFEEPEGRISINALEF----------------------RFVG-----------GKNDDLVNI------------------------SGE

Query:  TLRFPITYEKVLDFCYHCGRIGHVLQEC----DEGDSEGNEVKNYGVELR
            PI YE++  FC+ CG +GH++ EC    ++G  EG+ +  YG  LR
Subjt:  TLRFPITYEKVLDFCYHCGRIGHVLQEC----DEGDSEGNEVKNYGVELR

TXG60558.1 hypothetical protein EZV62_015131 [Acer yangbiense]1.3e-0432.08Show/hide
Query:  GPWSFDGSLLLFEEPEGRISINALEFRFVG-------------------------GKNDDLVNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDEGDS
        GPW FD SL++ E+PEG  +I+ L F  V                          GK D L NI    L+    YE++  FCY CGR+GH + EC + ++
Subjt:  GPWSFDGSLLLFEEPEGRISINALEFRFVG-------------------------GKNDDLVNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDEGDS

Query:  EGNEVK
        +   ++
Subjt:  EGNEVK

TXG67435.1 hypothetical protein EZV62_008710 [Acer yangbiense]1.2e-0741.18Show/hide
Query:  GGPWSFDGSLLLFEEPEGRISINALEF---RFVGGKNDDL---------VNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDE
        GG WSFD +L++ EEP G+  I +L+F    F  G   D          V   GE +  PI YE++ DFC+HCG +GH +Q C E
Subjt:  GGPWSFDGSLLLFEEPEGRISINALEF---RFVGGKNDDL---------VNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDE

XP_042968999.1 uncharacterized protein LOC122301670 [Carya illinoinensis]5.7e-0526.72Show/hide
Query:  EVSPMTEGGPWSFDGSLLLFEEPEGRISINALEFRF--------------VGGKNDDLVNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDE--GDSE
        ++  +  G PW FD  L + +E EG   ++ + F +              +  +    +N+ GE++  P +YEK+   C+ CG + H ++ C    G+S+
Subjt:  EVSPMTEGGPWSFDGSLLLFEEPEGRISINALEFRF--------------VGGKNDDLVNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDE--GDSE

Query:  GNEVKNYGVELRQNQG
        G E   YG+ +R  QG
Subjt:  GNEVKNYGVELRQNQG

TrEMBL top hitse value%identityAlignment
A0A5C7GUN1 Uncharacterized protein2.8e-0528.67Show/hide
Query:  GGPWSFDGSLLLFEEPEGRISINALEF----------------------RFVG-----------GKNDDLVNI------------------------SGE
        GGPWSFDG+L++ EEPEG+ +IN+L F                      +F+G           G + D +                           GE
Subjt:  GGPWSFDGSLLLFEEPEGRISINALEF----------------------RFVG-----------GKNDDLVNI------------------------SGE

Query:  TLRFPITYEKVLDFCYHCGRIGHVLQEC----DEGDSEGNEVKNYGVELR
            PI YE++  FC+ CG +GH++ EC    ++G  EG+ +  YG  LR
Subjt:  TLRFPITYEKVLDFCYHCGRIGHVLQEC----DEGDSEGNEVKNYGVELR

A0A5C7HUP3 CCHC-type domain-containing protein6.1e-0532.08Show/hide
Query:  GPWSFDGSLLLFEEPEGRISINALEFRFVG-------------------------GKNDDLVNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDEGDS
        GPW FD SL++ E+PEG  +I+ L F  V                          GK D L NI    L+    YE++  FCY CGR+GH + EC + ++
Subjt:  GPWSFDGSLLLFEEPEGRISINALEFRFVG-------------------------GKNDDLVNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDEGDS

Query:  EGNEVK
        +   ++
Subjt:  EGNEVK

A0A5C7IEL6 Uncharacterized protein5.9e-0841.18Show/hide
Query:  GGPWSFDGSLLLFEEPEGRISINALEF---RFVGGKNDDL---------VNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDE
        GG WSFD +L++ EEP G+  I +L+F    F  G   D          V   GE +  PI YE++ DFC+HCG +GH +Q C E
Subjt:  GGPWSFDGSLLLFEEPEGRISINALEF---RFVGGKNDDL---------VNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDE

A0A5C7IT66 CCHC-type domain-containing protein8.0e-0525.93Show/hide
Query:  GGPWSFDGSLLLFEEPEGRISINALEF----------------------RFVGGKNDDLVNI-----------------------------------SGE
        GGPWSFDG+L++ EEPEG+ +IN+L F                      +F+G    ++  +                                    GE
Subjt:  GGPWSFDGSLLLFEEPEGRISINALEF----------------------RFVGGKNDDLVNI-----------------------------------SGE

Query:  TLRFPITYEKVLDFCYHCGRIGHVLQECDEGDSEG
            PI YE++  FC+ CG +GH ++EC     +G
Subjt:  TLRFPITYEKVLDFCYHCGRIGHVLQECDEGDSEG

A0A5D3C0K2 Reverse transcriptase2.4e-0947.95Show/hide
Query:  PITYEKVLDFCYHCGRIGHVLQECDEGDSEGNEVKNYGVELRQNQGNKGINKNIQTLVNEGINF-RGRGRGKG
        P++YEK+ DFCY CGR+GHV+QEC E   +G E + +GV LR++Q ++ I+K  +  V       RGRG GKG
Subjt:  PITYEKVLDFCYHCGRIGHVLQECDEGDSEGNEVKNYGVELRQNQGNKGINKNIQTLVNEGINF-RGRGRGKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCCAGAAGTTTCACCCATGACTGAAGGGGGCCCATGGAGTTTTGATGGTAGCTTGCTGCTGTTCGAGGAACCTGAAGGGAGAATCAGCATAAACGCATTGGAATT
CAGGTTCGTTGGAGGCAAAAATGACGATCTAGTGAATATAAGTGGCGAAACGTTGAGGTTCCCCATAACATACGAAAAAGTGCTGGACTTCTGCTACCATTGCGGGAGAA
TCGGTCATGTTTTGCAAGAATGCGATGAAGGAGATTCAGAAGGTAATGAGGTGAAAAACTATGGAGTTGAGCTAAGACAAAATCAGGGCAATAAAGGCATCAACAAAAAC
ATACAAACGTTGGTGAATGAAGGAATAAACTTCAGAGGAAGAGGAAGGGGAAAAGGAGAGGGTGGAAGAATCAGGAATGATATTCGACAAATGATAAGCAAGGAGGATAG
AGAAAGAAATCAACACGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCCAGAAGTTTCACCCATGACTGAAGGGGGCCCATGGAGTTTTGATGGTAGCTTGCTGCTGTTCGAGGAACCTGAAGGGAGAATCAGCATAAACGCATTGGAATT
CAGGTTCGTTGGAGGCAAAAATGACGATCTAGTGAATATAAGTGGCGAAACGTTGAGGTTCCCCATAACATACGAAAAAGTGCTGGACTTCTGCTACCATTGCGGGAGAA
TCGGTCATGTTTTGCAAGAATGCGATGAAGGAGATTCAGAAGGTAATGAGGTGAAAAACTATGGAGTTGAGCTAAGACAAAATCAGGGCAATAAAGGCATCAACAAAAAC
ATACAAACGTTGGTGAATGAAGGAATAAACTTCAGAGGAAGAGGAAGGGGAAAAGGAGAGGGTGGAAGAATCAGGAATGATATTCGACAAATGATAAGCAAGGAGGATAG
AGAAAGAAATCAACACGAATAG
Protein sequenceShow/hide protein sequence
MSPEVSPMTEGGPWSFDGSLLLFEEPEGRISINALEFRFVGGKNDDLVNISGETLRFPITYEKVLDFCYHCGRIGHVLQECDEGDSEGNEVKNYGVELRQNQGNKGINKN
IQTLVNEGINFRGRGRGKGEGGRIRNDIRQMISKEDRERNQHE