; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036460 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036460
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:46768558..46769474
RNA-Seq ExpressionLag0036460
SyntenyLag0036460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]7.9e-1227.71Show/hide
Query:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRD------------------------RSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL
        ++AY+L   S+W +      SWC   I   RD                        +   IL+      + D  S  + ++S+ +  DGEW WP  S +L
Subjt:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRD------------------------RSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL

Query:  VDLSSSVFYIQIDPSV----LWCLGFDSCDFVGTFLGTL----------------------LLCGLLFELNS----TRMIRFVSGILLFLPFVSCAGASN
        +DL   V  ++   SV    +W  G      + + L T+                        C  L   N      R+ R+ S +   + F+ C G   
Subjt:  VDLSSSVFYIQIDPSV----LWCLGFDSCDFVGTFLGTL----------------------LLCGLLFELNS----TRMIRFVSGILLFLPFVSCAGASN

Query:  SRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSIRVCV
        SRDHLFF CPF   VW  VL   +SSHRI  W +EL  WI H  I + V
Subjt:  SRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSIRVCV

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]1.2e-1230.04Show/hide
Query:  SWFVLIRYEVVCGLLG------LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDRSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVD
        SW +    +++   LG      ++AY+L G S+W +      SWC   I   R++   +  H     + D  S  + K+SD +  +GEW WP  S +L+D
Subjt:  SWFVLIRYEVVCGLLG------LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDRSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVD

Query:  LSSSVFYI----QIDPSVLWCLGFDS-----------CDFVGTFLGTLLLCG--------------LLFELNS-TRMIRFVSGILLFLPFVSCAGASNSR
        L   V  +     +  S +W  G              C   G  L   LL G              +   L++  R+ R+ S I   L  + C G   SR
Subjt:  LSSSVFYI----QIDPSVLWCLGFDS-----------CDFVGTFLGTLLLCG--------------LLFELNS-TRMIRFVSGILLFLPFVSCAGASNSR

Query:  DHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI
        DHLFF CPF   VW  V     SSHRI  W +EL  WI H  I
Subjt:  DHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]2.2e-0931.61Show/hide
Query:  ILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVDLSSSVFYIQI----DPSVLWCLGFDSCDFVGTFLGTL-------LLCGLLFELNSTRMIRFVSGI--
        I DV SS   KV D L  DG W WP  S DL++L   V  ++     +   +W         V +  G L           LL+   +     F+S +  
Subjt:  ILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVDLSSSVFYIQI----DPSVLWCLGFDSCDFVGTFLGTL-------LLCGLLFELNSTRMIRFVSGI--

Query:  ---------------LLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI
                       L+    V CAG   SRDHLF DCP+  +VW  ++ W  SSHR++ WS EL  WI H ++
Subjt:  ---------------LLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]4.3e-1028.32Show/hide
Query:  GLLGLKAYVLCGCSIWVIHLWDNVSWCWSVIFGVR---DRSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVDLSSSVFYIQIDPSV-
        G+LGL    + G SI +I     + W W++   +     +   I+Q F    I D GS    ++ D +  DG+W WP  S DL+D+   +  ++   SV 
Subjt:  GLLGLKAYVLCGCSIWVIHLWDNVSWCWSVIFGVR---DRSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVDLSSSVFYIQIDPSV-

Query:  ---LWCLG-FDSCDFVGTF------LGTLLLCGLLFELNSTRMIRFVSGILLF-----------------LPFVSCAGASNSRDHLFFDCPFRSSVWGEV
           +W  G  DS      +         +   GLL++  +     F + + +                  L  + C G   SRDHLFF CPF   +W  +
Subjt:  ---LWCLG-FDSCDFVGTF------LGTLLLCGLLFELNSTRMIRFVSGILLF-----------------LPFVSCAGASNSRDHLFFDCPFRSSVWGEV

Query:  LFWGSSSHRITCWSMELVDWIRHSSI
        L + SSSHRI  W +EL  WI +  I
Subjt:  LFWGSSSHRITCWSMELVDWIRHSSI

XP_031737556.1 uncharacterized protein LOC116402448 [Cucumis sativus]1.5e-1026.69Show/hide
Query:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRD------------------------RSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL
        ++AY+L G S+W I +    SWC+  I   RD                        +   I+Q F    I D  S    ++ D +  DG+W W   S DL
Subjt:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRD------------------------RSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL

Query:  VDLSSSVFYIQIDPSV--LWCLG---------FDSCDFVGTFLGTLLLCGLLFELNS-------------------TRMIRFVSGILLFLPFVSCAGASN
        +D+   +  ++  PSV  +W              +C+ +      +   GLL+   +                    R+ R+ S I   L  + C     
Subjt:  VDLSSSVFYIQIDPSV--LWCLG---------FDSCDFVGTFLGTLLLCGLLFELNS-------------------TRMIRFVSGILLFLPFVSCAGASN

Query:  SRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMEL
        SRDHLFF CPF   +W  +L + SSSHRI  W +EL
Subjt:  SRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMEL

TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein3.8e-1227.71Show/hide
Query:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRD------------------------RSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL
        ++AY+L   S+W +      SWC   I   RD                        +   IL+      + D  S  + ++S+ +  DGEW WP  S +L
Subjt:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRD------------------------RSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL

Query:  VDLSSSVFYIQIDPSV----LWCLGFDSCDFVGTFLGTL----------------------LLCGLLFELNS----TRMIRFVSGILLFLPFVSCAGASN
        +DL   V  ++   SV    +W  G      + + L T+                        C  L   N      R+ R+ S +   + F+ C G   
Subjt:  VDLSSSVFYIQIDPSV----LWCLGFDSCDFVGTFLGTL----------------------LLCGLLFELNS----TRMIRFVSGILLFLPFVSCAGASN

Query:  SRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSIRVCV
        SRDHLFF CPF   VW  VL   +SSHRI  W +EL  WI H  I + V
Subjt:  SRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSIRVCV

A0A5A7TZS0 Reverse transcriptase domain-containing protein5.9e-1330.04Show/hide
Query:  SWFVLIRYEVVCGLLG------LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDRSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVD
        SW +    +++   LG      ++AY+L G S+W +      SWC   I   R++   +  H     + D  S  + K+SD +  +GEW WP  S +L+D
Subjt:  SWFVLIRYEVVCGLLG------LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDRSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVD

Query:  LSSSVFYI----QIDPSVLWCLGFDS-----------CDFVGTFLGTLLLCG--------------LLFELNS-TRMIRFVSGILLFLPFVSCAGASNSR
        L   V  +     +  S +W  G              C   G  L   LL G              +   L++  R+ R+ S I   L  + C G   SR
Subjt:  LSSSVFYI----QIDPSVLWCLGFDS-----------CDFVGTFLGTLLLCG--------------LLFELNS-TRMIRFVSGILLFLPFVSCAGASNSR

Query:  DHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI
        DHLFF CPF   VW  V     SSHRI  W +EL  WI H  I
Subjt:  DHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI

A0A5A7UP65 Reverse transcriptase1.8e-0928.18Show/hide
Query:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDR------------------------SPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL
        ++AYVL G S+W +      SWC   I   +++                           IL+      + D  S  +  +S+ +  DGEW WP     +
Subjt:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDR------------------------SPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL

Query:  VDLSSSVFYIQIDPSVLWCLGFDSCDFVGTFLGTLLLCGLLFELN----STRMIRFVSGILLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSS
             ++        VLW    D   + G  +     C  L   +      R  R+ S +   L  + C G   SRDHLFF CPF   VW  VL   +SS
Subjt:  VDLSSSVFYIQIDPSVLWCLGFDSCDFVGTFLGTLLLCGLLFELN----STRMIRFVSGILLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSS

Query:  HRITCWSMELVDWIRHSSIR
        HRI  W +EL  WI H  IR
Subjt:  HRITCWSMELVDWIRHSSIR

A0A5D3D7P6 Reverse transcriptase1.8e-0928.18Show/hide
Query:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDR------------------------SPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL
        ++AYVL G S+W +      SWC   I   +++                           IL+      + D  S  +  +S+ +  DGEW WP     +
Subjt:  LKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDR------------------------SPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDL

Query:  VDLSSSVFYIQIDPSVLWCLGFDSCDFVGTFLGTLLLCGLLFELN----STRMIRFVSGILLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSS
             ++        VLW    D   + G  +     C  L   +      R  R+ S +   L  + C G   SRDHLFF CPF   VW  VL   +SS
Subjt:  VDLSSSVFYIQIDPSVLWCLGFDSCDFVGTFLGTLLLCGLLFELN----STRMIRFVSGILLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSS

Query:  HRITCWSMELVDWIRHSSIR
        HRI  W +EL  WI H  IR
Subjt:  HRITCWSMELVDWIRHSSIR

A0A6J1E271 uncharacterized protein LOC1110253241.0e-0931.61Show/hide
Query:  ILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVDLSSSVFYIQI----DPSVLWCLGFDSCDFVGTFLGTL-------LLCGLLFELNSTRMIRFVSGI--
        I DV SS   KV D L  DG W WP  S DL++L   V  ++     +   +W         V +  G L           LL+   +     F+S +  
Subjt:  ILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVDLSSSVFYIQI----DPSVLWCLGFDSCDFVGTFLGTL-------LLCGLLFELNSTRMIRFVSGI--

Query:  ---------------LLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI
                       L+    V CAG   SRDHLF DCP+  +VW  ++ W  SSHR++ WS EL  WI H ++
Subjt:  ---------------LLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTATTAGCTTCATGGTTTGTTCTTATTCGTTATGAGGTTGTTTGTGGTTTGCTTGGATTGAAGGCGTATGTTTTGTGTGGGTGTAGCATTTGGGTTATTCATCT
ATGGGACAATGTATCTTGGTGTTGGAGTGTCATCTTTGGTGTTAGAGATAGGAGCCCTATTATTCTTCAGCATTTCAGAACTATTACCATTTTAGATGTTGGTAGCTCTT
TACAAAGGAAGGTTTCTGATTTACTTAAGGTTGATGGTGAGTGGCATTGGCCTTGTAATTCATCTGACCTGGTGGATCTTTCTTCCTCGGTGTTTTATATTCAGATTGAC
CCTAGTGTCCTGTGGTGTCTTGGTTTCGACTCTTGTGATTTTGTGGGAACATTCCTAGGCACTCTTTTATTGTGTGGCTTGTTATTTGAGTTAAACTCTACACGCATGAT
CAGATTCGTTAGTGGAATTCTTCTATTCCTACCGTTTGTGTCCTGTGCAGGGGCATCTAATTCTCGTGATCATTTGTTCTTTGATTGCCCATTTCGTAGCTCCGTATGGG
GTGAGGTGCTATTTTGGGGCAGTTCCTCCCATCGGATTACTTGTTGGTCTATGGAGCTTGTTGACTGGATTCGTCATTCTAGTATAAGAGTTTGTGTTGTAGAGTTTGGA
GGGTACCTTGGGCTACAATTATATACCATATTTGGAAGGAGTGTTACCTTTATGTACATGGATCTCCTTCTTGGTCTTCTTAGGCTTTGCTACAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTATTAGCTTCATGGTTTGTTCTTATTCGTTATGAGGTTGTTTGTGGTTTGCTTGGATTGAAGGCGTATGTTTTGTGTGGGTGTAGCATTTGGGTTATTCATCT
ATGGGACAATGTATCTTGGTGTTGGAGTGTCATCTTTGGTGTTAGAGATAGGAGCCCTATTATTCTTCAGCATTTCAGAACTATTACCATTTTAGATGTTGGTAGCTCTT
TACAAAGGAAGGTTTCTGATTTACTTAAGGTTGATGGTGAGTGGCATTGGCCTTGTAATTCATCTGACCTGGTGGATCTTTCTTCCTCGGTGTTTTATATTCAGATTGAC
CCTAGTGTCCTGTGGTGTCTTGGTTTCGACTCTTGTGATTTTGTGGGAACATTCCTAGGCACTCTTTTATTGTGTGGCTTGTTATTTGAGTTAAACTCTACACGCATGAT
CAGATTCGTTAGTGGAATTCTTCTATTCCTACCGTTTGTGTCCTGTGCAGGGGCATCTAATTCTCGTGATCATTTGTTCTTTGATTGCCCATTTCGTAGCTCCGTATGGG
GTGAGGTGCTATTTTGGGGCAGTTCCTCCCATCGGATTACTTGTTGGTCTATGGAGCTTGTTGACTGGATTCGTCATTCTAGTATAAGAGTTTGTGTTGTAGAGTTTGGA
GGGTACCTTGGGCTACAATTATATACCATATTTGGAAGGAGTGTTACCTTTATGTACATGGATCTCCTTCTTGGTCTTCTTAGGCTTTGCTACAAGTAG
Protein sequenceShow/hide protein sequence
MKLLASWFVLIRYEVVCGLLGLKAYVLCGCSIWVIHLWDNVSWCWSVIFGVRDRSPIILQHFRTITILDVGSSLQRKVSDLLKVDGEWHWPCNSSDLVDLSSSVFYIQID
PSVLWCLGFDSCDFVGTFLGTLLLCGLLFELNSTRMIRFVSGILLFLPFVSCAGASNSRDHLFFDCPFRSSVWGEVLFWGSSSHRITCWSMELVDWIRHSSIRVCVVEFG
GYLGLQLYTIFGRSVTFMYMDLLLGLLRLCYK