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Lag0036465 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036465
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr3:46824033..46824443
RNA-Seq ExpressionLag0036465
SyntenyLag0036465
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.7e-3050Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLP   +YDG  D + H D Y  W + +G  E  +CR FS TLTG  R W+ +L RKSI SFK+L+R F TQF G  +R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        +  ESL  Y+ RF+ E +QVEG  D V L   ISG+
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]2.8e-3252.21Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLPT  Q+DG  DLV H D YR WM+ +G  E  KCR FS TL+G AR W+ +L R SI SFK L++ F TQF+G R R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        R  ESL+ Y+ RF+ E +QVEG  + V+L   +S +
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.1e-3152.21Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLPT  Q+D   D V H D YR WM+ +G  E  +CR FS TL G AR W+ +L R SI SFK L+R F TQF+G R R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        R  ESL  Y+ RF+ E +QVEG  D V+L   +SG+
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]3.5e-3050Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLPT   +DG  + V H D YR WM+ +G  +  +CR FS TL G AR W+ +L R SI SFK L+R F TQF+G R R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        R  ESL+ Y+ RF+ E +Q+EG  D V+L   +SG+
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.3e-2949.26Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M A+ P +F LP    YDG++D  +H + YR+ ME  GA +   CRAF LTL G AR W+ +L   SI SF  LSR F + F  AR R KP   LLT+KQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        + GE+L  YI R++NE+ QV+GYDDG+AL+ ++ GL
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.3e-3050Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLP   +YDG  D + H D Y  W + +G  E  +CR FS TLTG  R W+ +L RKSI SFK+L+R F TQF G  +R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        +  ESL  Y+ RF+ E +QVEG  D V L   ISG+
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

A0A6J1D7D2 uncharacterized protein LOC1110183071.4e-3252.21Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLPT  Q+DG  DLV H D YR WM+ +G  E  KCR FS TL+G AR W+ +L R SI SFK L++ F TQF+G R R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        R  ESL+ Y+ RF+ E +QVEG  + V+L   +S +
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

A0A6J1DWY0 uncharacterized protein LOC1110252932.0e-3152.21Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLPT  Q+D   D V H D YR WM+ +G  E  +CR FS TL G AR W+ +L R SI SFK L+R F TQF+G R R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        R  ESL  Y+ RF+ E +QVEG  D V+L   +SG+
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

A0A6J1DZ49 uncharacterized protein LOC1110248511.9e-2948.53Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +   KFKLP   +YDG  D + H D YR W + +   E  +CR FS TLTG AR W+ +L R SI SFK+L+  F TQF+G R + KP   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        +  ESL  Y+ RF+ E +QVEG  D VAL   +SG+
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

A0A6J1E1E7 uncharacterized protein LOC1110255481.7e-3050Show/hide
Query:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ
        M+ +VP KFKLPT   +DG  + V H D YR WM+ +G  +  +CR FS TL G AR W+ +L R SI SFK L+R F TQF+G R R +P   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQ

Query:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL
        R  ESL+ Y+ RF+ E +Q+EG  D V+L   +SG+
Subjt:  RPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCAGAAGTTCCACACAAGTTCAAGTTACCAACTTTCCCACAATATGACGGGAAGAAAGATTTGGTTCAGCATTATGACACCTACCGATCTTGGATGGAGTTTCA
TGGGGCTTTCGAGACGACCAAGTGTCGTGCTTTTTCTCTAACCTTGACGGGAATAGCGCGAGAGTGGTACAACAAATTGCCACGGAAGTCCATCGGGTCTTTCAAGAAGT
TGTCGCGCATTTTCGCTACACAGTTTTTAGGGGCCAGAGATCGAAGAAAACCACAGTTCAACCTATTGACCATTAAACAGAGACCGGGGGAAAGCTTGAACGGATATATT
ACACGCTTCAGTAATGAGGTGGTACAGGTGGAAGGGTATGATGATGGTGTGGCTCTAACAACGGTTATTTCAGGGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCAGAAGTTCCACACAAGTTCAAGTTACCAACTTTCCCACAATATGACGGGAAGAAAGATTTGGTTCAGCATTATGACACCTACCGATCTTGGATGGAGTTTCA
TGGGGCTTTCGAGACGACCAAGTGTCGTGCTTTTTCTCTAACCTTGACGGGAATAGCGCGAGAGTGGTACAACAAATTGCCACGGAAGTCCATCGGGTCTTTCAAGAAGT
TGTCGCGCATTTTCGCTACACAGTTTTTAGGGGCCAGAGATCGAAGAAAACCACAGTTCAACCTATTGACCATTAAACAGAGACCGGGGGAAAGCTTGAACGGATATATT
ACACGCTTCAGTAATGAGGTGGTACAGGTGGAAGGGTATGATGATGGTGTGGCTCTAACAACGGTTATTTCAGGGTTGTAG
Protein sequenceShow/hide protein sequence
MQAEVPHKFKLPTFPQYDGKKDLVQHYDTYRSWMEFHGAFETTKCRAFSLTLTGIAREWYNKLPRKSIGSFKKLSRIFATQFLGARDRRKPQFNLLTIKQRPGESLNGYI
TRFSNEVVQVEGYDDGVALTTVISGL