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Lag0036469 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036469
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr3:46883940..46884287
RNA-Seq ExpressionLag0036469
SyntenyLag0036469
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-0942.99Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S  + +SN+Y GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN +     SSS +    + PDVMSVMM D  T E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI+ L+
Subjt:  KKISMLL
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.4e-0842.06Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI++L+
Subjt:  KKISMLL
XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.4e-0842.06Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI++L+
Subjt:  KKISMLL
XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.4e-0842.06Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI++L+
Subjt:  KKISMLL
XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.4e-0842.06Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI++L+
Subjt:  KKISMLL
TrEMBL top hitse value%identityAlignment
A0A5A7VCU1 Ty3-gypsy retrotransposon protein5.8e-0840.19Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S+ + +S+ Y GPITR+RSK    E  Q   +   +L+++ ES +  I   EN +     S+S +      PDVMSVMMTD  T+E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI+ L+
Subjt:  KKISMLL
A0A5A7VFQ8 Ty3-gypsy retrotransposon protein3.4e-0839.25Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK + +S++Y+GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN +     S+S +    + PDVMSVMM D  T E  M ++E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +K++ L+
Subjt:  KKISMLL
A0A5A7VJT9 Ty3-gypsy retrotransposon protein3.4e-0841.12Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        MTS + SSK + +S++Y  P+T SRSK    +  Q  VIA  +L+++ E ++ EI   EN +   F S S +    + PDVMSVMM +  T E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI++L+
Subjt:  KKISMLL
A0A5D3BDK1 Ty3-gypsy retrotransposon protein5.8e-0841.12Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S  + +S++Y GPITR+RSK    E  Q   IA  +L+++ ES +  I   EN +     S+S +    + PDVMSV+MTD  T+E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI+ L+
Subjt:  KKISMLL
A0A5D3BY54 Ty3-gypsy retrotransposon protein4.0e-0942.99Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S  + +SN+Y GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN +     SSS +    + PDVMSVMM D  T E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLL
        +KI+ L+
Subjt:  KKISMLL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCTCCAAGGAAACCCAACATGAAAACAGCCAAACTCC
TGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAGATCGCCGCTGCAGAAAATCTGATGCTTGGCAAATTCGTCTCTTCTTCTCAGCAACCAA
ACGACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTTGTAGACACC
GTATTTGGTCCGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCTCCAAGGAAACCCAACATGAAAACAGCCAAACTCC
TGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAGATCGCCGCTGCAGAAAATCTGATGCTTGGCAAATTCGTCTCTTCTTCTCAGCAACCAA
ACGACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTTGTAGACACC
GTATTTGGTCCGGCTTGA
Protein sequenceShow/hide protein sequence
MTSEEASSKIAASSNSYVGPITRSRSKETQHENSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFVSSSQQPNDTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLVDT
VFGPA