; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036470 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036470
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr3:46906464..46908396
RNA-Seq ExpressionLag0036470
SyntenyLag0036470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-2063.54Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC +S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M + + K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2064.58Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.4e-2064.58Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.9e-2062.5Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EE+NQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F+E N D K+H+ VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-2063.54Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T++Q KR+M + + K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.5e-2063.54Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC +S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M + + K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

A0A5A7TQ06 Retrotransposon gag protein6.7e-2164.58Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

A0A5D3BBF9 Gag protease polyprotein6.7e-2164.58Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

A0A5D3D209 Retrotransposon gag protein1.9e-2063.54Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T++Q KR+M + + K F+E N D K+HS VPSRMKRK SV I TEGSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

A0A5D3D5Q0 Gag protease polyprotein4.3e-2062.5Show/hide
Query:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV
        +SM   EEENQC  S   R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F+E N D K+HS VPSRMKRK S+ I T+GSL V
Subjt:  MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCGCGATAGAAGAAGAAAATCAATGTTCGGTGTCCGCCTCCGTTCGACTTTCAGCTTTCCAAAGGCTTAGTGTCTCTACATCGAAGAAAAGTCGACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCAATGAAGTAAACCGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTTCCTCCAAGTACGAAGG
TGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCCAAGTTCAAAGGTTTTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAA
GGTTATCTCCTCCAAGTCGAAGGTTCTCACATTGCTTCACTGCAATTCCTTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGTAGTTCCTTCTCTCCAAGTACGAA
GGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACATTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCAA
AGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTTCAAGTGTGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACATTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCG
AAGGTTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGTTTCTTCTCTCTAAGTTCGAAGGTTCTCACGCGCTTCGCTG
CAGTTTCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGCGCTTGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAATTCCTT
CCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTACTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACG
CGCTTCGCTCGCTCATTCTCCAAGTTCGAAGGCGCTTCTCTCCACTCCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTC
TCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCTCTCCTTTTGAAGGTTCGCCACTGAGGTTC
TCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCACGTTCCACTTCATCTTCAAATGTTGGCATTTGATGGCGTCTGTTG
CGCTTCATCTTCAAATGTTGGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCGCGATAGAAGAAGAAAATCAATGTTCGGTGTCCGCCTCCGTTCGACTTTCAGCTTTCCAAAGGCTTAGTGTCTCTACATCGAAGAAAAGTCGACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCAATGAAGTAAACCGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTTCCTCCAAGTACGAAGG
TGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCCAAGTTCAAAGGTTTTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAA
GGTTATCTCCTCCAAGTCGAAGGTTCTCACATTGCTTCACTGCAATTCCTTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGTAGTTCCTTCTCTCCAAGTACGAA
GGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACATTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCAA
AGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTTCAAGTGTGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACATTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCG
AAGGTTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGTTTCTTCTCTCTAAGTTCGAAGGTTCTCACGCGCTTCGCTG
CAGTTTCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGCGCTTGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAATTCCTT
CCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTACTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACG
CGCTTCGCTCGCTCATTCTCCAAGTTCGAAGGCGCTTCTCTCCACTCCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTC
TCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCTCTCCTTTTGAAGGTTCGCCACTGAGGTTC
TCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCACGTTCCACTTCATCTTCAAATGTTGGCATTTGATGGCGTCTGTTG
CGCTTCATCTTCAAATGTTGGCAGTTGA
Protein sequenceShow/hide protein sequence
MSMVAIEEENQCSVSASVRLSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFNEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKVLTCFAAVPFLQVRR
CSFSKFEGSYIAAMQFLLSKFKGFHAFRYSSFSPSTKVISSKSKVLTLLHCNSFLQVRRFSRCFVVVPSLQVRRFSPPSRRFSHIASLQFLPPSSKVFMRFAAVPSLQVQ
RFSRVPLQFLLFKCEGSLLQVEGSLTLLRCSSFLQVRRFSCALLQFLLSKFEGSHALRYSFFSLSSKVLTRFAAVSSSKFEGFEGSHALRLLQFLPPSSKVLMRFAAQFL
PPSSKVLMRFATTFLQVRRFSHALLQFLPPSSKVPSRASLAHSPSSKALLSTPPSPSSKALLSAAPSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTSPFEGSPLRF
SFSKFEGSPLLLFKCLAAVDGHVPLHLQMLAFDGVCCASSSNVGS