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Lag0036477 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036477
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S12
Genome locationchr3:46970662..46976989
RNA-Seq ExpressionLag0036477
SyntenyLag0036477
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571063.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]2.9e-0882.93Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

KAG7035048.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-0880.95Show/hide
Query:  QLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        +LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  QLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

XP_008461174.1 PREDICTED: 40S ribosomal protein S12 [Cucumis melo]1.7e-0881.4Show/hide
Query:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        S LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

XP_023007085.1 40S ribosomal protein S12-like [Cucurbita maxima]2.9e-0882.93Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

XP_023512603.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]2.9e-0882.93Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

TrEMBL top hitse value%identityAlignment
A0A1S3CDM3 40S ribosomal protein S128.3e-0981.4Show/hide
Query:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        S LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

A0A5A7UX10 40S ribosomal protein S128.3e-0981.4Show/hide
Query:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        S LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

A0A6J1G761 40S ribosomal protein S121.4e-0882.93Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

A0A6J1JGV5 40S ribosomal protein S121.4e-0882.93Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

A0A6J1L207 40S ribosomal protein S121.4e-0882.93Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEGK RKVVG  CVVVK  GEDHEALHIV KH+SSS
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

SwissProt top hitse value%identityAlignment
O13019 40S ribosomal protein S125.9e-0452.5Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS
        LCKID EGK RKVVG  CVVVK  G++ +A  ++ ++  S
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS

P80455 40S ribosomal protein S127.7e-0452.27Show/hide
Query:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSSS
        S LCKID EGK RKV G   VV+K  GE+  AL +V  H+  +S
Subjt:  SQLCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSSS

Q9S9P1 40S ribosomal protein S12-13.7e-0665Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS
        LCKIDSEG  RKVVG  C+VVK  GE+  AL IV+KH++S
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS

Q9SKZ3 40S ribosomal protein S12-23.7e-0660.98Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEG  RKVVG  C+V+K  GE+  AL+IV KH+ S+
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

Q9XHS0 40S ribosomal protein S128.3e-0660Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS
        LCKID+EGK RKVVG  C+VVK  GE+ E L+IV +++ S
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS

Arabidopsis top hitse value%identityAlignment
AT1G15930.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.6e-0765Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS
        LCKIDSEG  RKVVG  C+VVK  GE+  AL IV+KH++S
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS

AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.6e-0765Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS
        LCKIDSEG  RKVVG  C+VVK  GE+  AL IV+KH++S
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSS

AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.6e-0760.98Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEG  RKVVG  C+V+K  GE+  AL+IV KH+ S+
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

AT2G32060.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.6e-0760.98Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEG  RKVVG  C+V+K  GE+  AL+IV KH+ S+
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS

AT2G32060.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.6e-0760.98Show/hide
Query:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS
        LCKIDSEG  RKVVG  C+V+K  GE+  AL+IV KH+ S+
Subjt:  LCKIDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTCACCTTCTTGGGACCGTCGAGGTTTTTAAACTCCATCGTCGTGATGAAGCTGCCTGAAATGTCCTCACTTTCGGGAAGTACTTTCCAGGCGAAGATGATGTT
CATGCAAGATGCTCCAACACAGGATGGGTCCAAACCGCTCTCGCCACCACTCATTATTGAAGAGGTATTGGGTAAAAGGTCGGGCCATGTGAAAAGAATGGGATGGGGGC
CAAAGCCTCCAAAATCTACAAGGAGTGGCGGATCCTCAAGCTCGGGACCCACACAACGTGAGCTAGAACAGGAGCAAATAATATTGAGTCTAACTTCGCAGCTATGCAAG
ATTGATTCGGAAGGAAAGACTAGGAAGGTTGTTGGGTGGTTTTGTGTTGTAGTTAAGGTGTGCGGGGAGGATCACGAGGCACTTCACATTGTCCATAAGCACATGAGTTC
AAGTTCATTTTCTCAATGGTATATTGCTCAATCCGTGTTATGCCGACGCCGTGTAGATGGTGTCGGCAGAACTTTTCTGCCGACGCCGTCTACACTGCATCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTTCACCTTCTTGGGACCGTCGAGGTTTTTAAACTCCATCGTCGTGATGAAGCTGCCTGAAATGTCCTCACTTTCGGGAAGTACTTTCCAGGCGAAGATGATGTT
CATGCAAGATGCTCCAACACAGGATGGGTCCAAACCGCTCTCGCCACCACTCATTATTGAAGAGGTATTGGGTAAAAGGTCGGGCCATGTGAAAAGAATGGGATGGGGGC
CAAAGCCTCCAAAATCTACAAGGAGTGGCGGATCCTCAAGCTCGGGACCCACACAACGTGAGCTAGAACAGGAGCAAATAATATTGAGTCTAACTTCGCAGCTATGCAAG
ATTGATTCGGAAGGAAAGACTAGGAAGGTTGTTGGGTGGTTTTGTGTTGTAGTTAAGGTGTGCGGGGAGGATCACGAGGCACTTCACATTGTCCATAAGCACATGAGTTC
AAGTTCATTTTCTCAATGGTATATTGCTCAATCCGTGTTATGCCGACGCCGTGTAGATGGTGTCGGCAGAACTTTTCTGCCGACGCCGTCTACACTGCATCGGTAG
Protein sequenceShow/hide protein sequence
MNFTFLGPSRFLNSIVVMKLPEMSSLSGSTFQAKMMFMQDAPTQDGSKPLSPPLIIEEVLGKRSGHVKRMGWGPKPPKSTRSGGSSSSGPTQRELEQEQIILSLTSQLCK
IDSEGKTRKVVGWFCVVVKVCGEDHEALHIVHKHMSSSSFSQWYIAQSVLCRRRVDGVGRTFLPTPSTLHR