| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025159.1 gag/pol protein [Cucumis melo var. makuwa] | 1.3e-75 | 59.5 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
MS+PEGFIT+GQEQKVCKLNRSIYGLKQASKSWNIRFD AIKS+GFDQNVDEPC+YKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
Query: PKTPQEVEDMRQIPYASTVGGLI----------------------------------------------------------YTDSDLQFDKDSRKSTSGS
PKTPQEVEDMR+IPYAS VG L+ YTDSD Q DKDSRKST GS
Subjt: PKTPQEVEDMRQIPYASTVGGLI----------------------------------------------------------YTDSDLQFDKDSRKSTSGS
Query: VFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
VFTLNGGAVVWRSI+Q CIADSTMEAEYVAACEA K+ VWLRKFL DLEVV NMNLPITLYY NS AVANSKEPRSHKR
Subjt: VFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| KAA0034955.1 gag/pol protein [Cucumis melo var. makuwa] | 5.7e-79 | 46.99 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
MSQ EGFITQGQEQKVCKLNRSIYGLKQAS+SWNIRFDTAIKS+GFDQNVDEPCVYKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
Query: ---------------------------------SPKTPQEVEDMRQIPYASTVGGLIY----TDSDL---------------------------------
PKTPQEVE+MR+I Y S VG L+Y T D+
Subjt: ---------------------------------SPKTPQEVEDMRQIPYASTVGGLIY----TDSDL---------------------------------
Query: -------------------QFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAV
Q DKDSRKSTS SVF LNGGAVVWRSI+Q CIADSTMEAEYVAACEAAK+ VWLRKFL DLEVV NMNLP+TLY NSGA+
Subjt: -------------------QFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAV
Query: ANSKEPRSHK-----------------------------------------------------------RDCPLICTGESDLHDDSISHHFGDKTEWGAE
ANSKEPRSHK RDCPLICT ES DSI F DKTEWGA
Subjt: ANSKEPRSHK-----------------------------------------------------------RDCPLICTGESDLHDDSISHHFGDKTEWGAE
Query: NIITQDGIHSFPTLG
NIITQDGIHSFP LG
Subjt: NIITQDGIHSFPTLG
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| KAA0058244.1 gag/pol protein [Cucumis melo var. makuwa] | 5.0e-75 | 65.71 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
MSQPEGFITQGQEQKVCKLNRSIYGLKQAS+SWNIRFDTAIKS+GFDQNVDEPCVYKKINK K+AFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
Query: PKTPQEVEDMRQIPYASTVGGLIY----TDSDL--------QFDKDS------------RKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEA
PKTPQEVED+R+IPYASTVG LIY T D+ ++ +S +KSTSGSVFTLNGGAVVW SI+Q CI DSTMEAEYVAACEA
Subjt: PKTPQEVEDMRQIPYASTVGGLIY----TDSDL--------QFDKDS------------RKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEA
Query: AKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
AK+ VWLRKFL DLEVV NM LPITLY NSGAVANSKEPRSHKR
Subjt: AKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 5.1e-80 | 46.17 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
MSQPEGFITQGQEQKVCKLNRSIYGLKQAS+SWNIRFDTAIKS+GFDQNVDEPCVYKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
Query: ---------------------------------------------------------SPKTPQEVEDMRQIPYASTVGGLI-------------------
SPKTPQEVEDMR+IPYAS VG L+
Subjt: ---------------------------------------------------------SPKTPQEVEDMRQIPYASTVGGLI-------------------
Query: ---------------------------------------YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLR
YTDSD Q DKDSRKSTSGSVFTLNGGAVVWRSI+Q CIADSTMEAEYVAACEAAK+ VWLR
Subjt: ---------------------------------------YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLR
Query: KFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR--------------------------------------------DCPLICTGESDLH---DDS
KFL DLEVV NMNLPITLY NSGAVANSKEPRSHKR + L G D++
Subjt: KFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR--------------------------------------------DCPLICTGESDLH---DDS
Query: ISHHFGDKTEWGAENIITQDGIHSFPTLGKK
S+HFGD TEW A NIITQDGIHSFP LG K
Subjt: ISHHFGDKTEWGAENIITQDGIHSFPTLGKK
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| TYK04889.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] | 4.5e-76 | 67.8 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
+ +PEGFITQGQEQKVCKLNRSIYGLKQAS+ WNIRFDTAIKS+GFDQNVDEPCVYKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
Query: --------------SPKTPQEVEDMRQIPYASTVGGLIYTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRK
PK PQEVEDMR+IPYASTVG YTD D Q DKDSRKSTS S+FTLNGGAVVWRSI+Q CIADSTMEAEYVAACEAAK+ +WLRK
Subjt: --------------SPKTPQEVEDMRQIPYASTVGGLIYTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRK
Query: FLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
FL DLEVV NMNL ITLY NSGAVANSKEP SHKR
Subjt: FLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SIN2 Gag/pol protein | 6.3e-76 | 59.5 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
MS+PEGFIT+GQEQKVCKLNRSIYGLKQASKSWNIRFD AIKS+GFDQNVDEPC+YKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
Query: PKTPQEVEDMRQIPYASTVGGLI----------------------------------------------------------YTDSDLQFDKDSRKSTSGS
PKTPQEVEDMR+IPYAS VG L+ YTDSD Q DKDSRKST GS
Subjt: PKTPQEVEDMRQIPYASTVGGLI----------------------------------------------------------YTDSDLQFDKDSRKSTSGS
Query: VFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
VFTLNGGAVVWRSI+Q CIADSTMEAEYVAACEA K+ VWLRKFL DLEVV NMNLPITLYY NS AVANSKEPRSHKR
Subjt: VFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| A0A5A7T0G5 Gag/pol protein | 2.7e-79 | 46.99 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
MSQ EGFITQGQEQKVCKLNRSIYGLKQAS+SWNIRFDTAIKS+GFDQNVDEPCVYKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
Query: ---------------------------------SPKTPQEVEDMRQIPYASTVGGLIY----TDSDL---------------------------------
PKTPQEVE+MR+I Y S VG L+Y T D+
Subjt: ---------------------------------SPKTPQEVEDMRQIPYASTVGGLIY----TDSDL---------------------------------
Query: -------------------QFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAV
Q DKDSRKSTS SVF LNGGAVVWRSI+Q CIADSTMEAEYVAACEAAK+ VWLRKFL DLEVV NMNLP+TLY NSGA+
Subjt: -------------------QFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAV
Query: ANSKEPRSHK-----------------------------------------------------------RDCPLICTGESDLHDDSISHHFGDKTEWGAE
ANSKEPRSHK RDCPLICT ES DSI F DKTEWGA
Subjt: ANSKEPRSHK-----------------------------------------------------------RDCPLICTGESDLHDDSISHHFGDKTEWGAE
Query: NIITQDGIHSFPTLG
NIITQDGIHSFP LG
Subjt: NIITQDGIHSFPTLG
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| A0A5A7USV4 Gag/pol protein | 2.4e-75 | 65.71 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
MSQPEGFITQGQEQKVCKLNRSIYGLKQAS+SWNIRFDTAIKS+GFDQNVDEPCVYKKINK K+AFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL--------------------------------S
Query: PKTPQEVEDMRQIPYASTVGGLIY----TDSDL--------QFDKDS------------RKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEA
PKTPQEVED+R+IPYASTVG LIY T D+ ++ +S +KSTSGSVFTLNGGAVVW SI+Q CI DSTMEAEYVAACEA
Subjt: PKTPQEVEDMRQIPYASTVGGLIY----TDSDL--------QFDKDS------------RKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEA
Query: AKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
AK+ VWLRKFL DLEVV NM LPITLY NSGAVANSKEPRSHKR
Subjt: AKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| A0A5A7UYE8 Gag/pol protein | 2.5e-80 | 46.17 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
MSQPEGFITQGQEQKVCKLNRSIYGLKQAS+SWNIRFDTAIKS+GFDQNVDEPCVYKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
Query: ---------------------------------------------------------SPKTPQEVEDMRQIPYASTVGGLI-------------------
SPKTPQEVEDMR+IPYAS VG L+
Subjt: ---------------------------------------------------------SPKTPQEVEDMRQIPYASTVGGLI-------------------
Query: ---------------------------------------YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLR
YTDSD Q DKDSRKSTSGSVFTLNGGAVVWRSI+Q CIADSTMEAEYVAACEAAK+ VWLR
Subjt: ---------------------------------------YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLR
Query: KFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR--------------------------------------------DCPLICTGESDLH---DDS
KFL DLEVV NMNLPITLY NSGAVANSKEPRSHKR + L G D++
Subjt: KFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR--------------------------------------------DCPLICTGESDLH---DDS
Query: ISHHFGDKTEWGAENIITQDGIHSFPTLGKK
S+HFGD TEW A NIITQDGIHSFP LG K
Subjt: ISHHFGDKTEWGAENIITQDGIHSFPTLGKK
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| A0A5D3C3C9 Retrovirus-related pol polyprotein from transposon tnt 1-94 | 2.2e-76 | 67.8 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
+ +PEGFITQGQEQKVCKLNRSIYGLKQAS+ WNIRFDTAIKS+GFDQNVDEPCVYKKINK KVAFL
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVYKKINKNKVAFL---------------------------------
Query: --------------SPKTPQEVEDMRQIPYASTVGGLIYTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRK
PK PQEVEDMR+IPYASTVG YTD D Q DKDSRKSTS S+FTLNGGAVVWRSI+Q CIADSTMEAEYVAACEAAK+ +WLRK
Subjt: --------------SPKTPQEVEDMRQIPYASTVGGLIYTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRK
Query: FLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
FL DLEVV NMNL ITLY NSGAVANSKEP SHKR
Subjt: FLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 4.9e-09 | 34.34 | Show/hide |
Query: YTDSDLQFDKDSRKSTSGSVFTL-NGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
Y DSD + RKST+G +F + + + W + Q +A S+ EAEY+A EA ++ +WL+ LT + + + PI +Y N G ++ + P HKR
Subjt: YTDSDLQFDKDSRKSTSGSVFTL-NGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWLRKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| P04146 Copia protein | 6.9e-03 | 39.29 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY
M P+G VCKLN++IYGLKQA++ W F+ A+K F + + C+Y
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY
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| P0CV72 Secreted RxLR effector protein 161 | 2.2e-09 | 53.33 | Show/hide |
Query: YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWL
Y+D+D D +SR+STSG +F LNGG V WRS +QR +A S+ E EY+A EA ++ VWL
Subjt: YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.6e-20 | 24.26 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY-KKINKNKVAFL--------------------------------
M QPEGF G++ VCKLN+S+YGLKQA + W ++FD+ +KS + + +PCVY K+ ++N L
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY-KKINKNKVAFL--------------------------------
Query: ----------------------------------------------------------SPKTPQEVEDMRQIPYASTVGGLI------------------
P T +E +M ++PY+S VG L+
Subjt: ----------------------------------------------------------SPKTPQEVEDMRQIPYASTVGGLI------------------
Query: ----------------------------------------YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWL
YTD+D+ D D+RKS++G +FT +GGA+ W+S Q+C+A ST EAEY+AA E K+ +WL
Subjt: ----------------------------------------YTDSDLQFDKDSRKSTSGSVFTLNGGAVVWRSIEQRCIADSTMEAEYVAACEAAKKTVWL
Query: RKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
++FL +L + +Y + A+ SK H R
Subjt: RKFLTDLEVVSNMNLPITLYYYNSGAVANSKEPRSHKR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.6e-05 | 37.5 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY
MSQP GFI + + VCKL +++YGLKQA ++W + + + GF +V + ++
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.3e-05 | 35.71 | Show/hide |
Query: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY
MSQP GF+ + + VC+L ++IYGLKQA ++W + T + + GF ++ + ++
Subjt: MSQPEGFITQGQEQKVCKLNRSIYGLKQASKSWNIRFDTAIKSFGFDQNVDEPCVY
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