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Lag0036497 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036497
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr3:47396895..47399338
RNA-Seq ExpressionLag0036497
SyntenyLag0036497
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]4.9e-3062.62Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A   MK +AD KRRE+ ++VG++V+LKLRPY Q SLARKR EKL+PKF+GPYTI+E+IG VAY+L LPP++SIH+VFH+SQLK  LGK    Q   P+L
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEWQ
        T DFE Q
Subjt:  TDDFEWQ

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]2.4e-2960.75Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A   MK  AD+ RRE+ +++G++V+LKLRPY Q SLARK+ EKLSPKF+GPY ++E+IG VAY+L LPP+++IHNVFHVSQLK  LGK    Q   PIL
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEWQ
        T+DFE Q
Subjt:  TDDFEWQ

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]2.4e-2961.68Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A   MK  AD KRRE+ ++VG++V+LKLRPY Q SLARKRSEKL+PKF+GPY I+E+IG VAY+L LPP++SIH+VFH+SQLK  LGK    Q   P+L
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEWQ
        T++FE Q
Subjt:  TDDFEWQ

TYK02435.1 disease resistance protein [Cucumis melo var. makuwa]1.9e-2957.02Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A   MK +AD KRRE+  +VG +V+LKLRPY Q SLARK+SEKL+P+F+GPY I+E+IGAVAY+LDLPP+++IHNVFH+SQLK  LG  +  Q   P+L
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEWQ-WNQK----RYNRV
        T++FE Q W +     R+N+V
Subjt:  TDDFEWQ-WNQK----RYNRV

TYK14998.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]6.4e-3062.04Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +  E MK+YAD+KRR V Y VG+ VFLK+RPY Q +L RKR+EKLSPKFFGPY ILEK+G+VAYKL+LP  +SIH VF+VSQLKK +G  E +Q     +
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEWQW
        T+ FEW+W
Subjt:  TDDFEWQW

TrEMBL top hitse value%identityAlignment
A0A5A7T0J9 Ty3/gypsy retrotransposon protein1.5e-2963.21Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A E MK +AD KRREV ++ G+ VFLKLRPY Q+SL +KR+EKLSPKFFGPY ILE+IG VAYKL+LP  ++IH VFHVSQLKKA+GK E  Q + P +
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEW
          + EW
Subjt:  TDDFEW

A0A5A7UKN8 Ty3/gypsy retrotransposon protein1.5e-2962.26Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A E MK +AD KRREV ++ G+ VFLKLRPY Q+SL +KR+EKLSPKFFGPY +LE+IG VAYKL+LP  ++IH VFHVSQLKKA+GK E  Q + P +
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEW
          + EW
Subjt:  TDDFEW

A0A5D3BTC7 Disease resistance protein9.0e-3057.02Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A   MK +AD KRRE+  +VG +V+LKLRPY Q SLARK+SEKL+P+F+GPY I+E+IGAVAY+LDLPP+++IHNVFH+SQLK  LG  +  Q   P+L
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEWQ-WNQK----RYNRV
        T++FE Q W +     R+N+V
Subjt:  TDDFEWQ-WNQK----RYNRV

A0A5D3CUU0 Transposon Ty3-G Gag-Pol polyprotein3.1e-3062.04Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +  E MK+YAD+KRR V Y VG+ VFLK+RPY Q +L RKR+EKLSPKFFGPY ILEK+G+VAYKL+LP  +SIH VF+VSQLKK +G  E +Q     +
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEWQW
        T+ FEW+W
Subjt:  TDDFEWQW

A0A5D3E6U0 Pentatricopeptide repeat-containing protein1.5e-2962.26Show/hide
Query:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL
        +A E MK +AD KRREV ++ G+ VFLKLRPY Q+SL +KR+EKLSPKFFGPY +LE+IG VAYKL+LP  ++IH VFHVSQLKKA+GK E  Q + P +
Subjt:  MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPIL

Query:  TDDFEW
          + EW
Subjt:  TDDFEW

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein7.4e-0538.55Show/hide
Query:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK
        MK Y D K +E+  ++ G+ V +K     ++    K S KL+P F GP+ +L+K G   Y+LDLP   K    + FHVS L+K
Subjt:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK

P0CT35 Transposon Tf2-2 polyprotein7.4e-0538.55Show/hide
Query:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK
        MK Y D K +E+  ++ G+ V +K     ++    K S KL+P F GP+ +L+K G   Y+LDLP   K    + FHVS L+K
Subjt:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK

P0CT36 Transposon Tf2-3 polyprotein7.4e-0538.55Show/hide
Query:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK
        MK Y D K +E+  ++ G+ V +K     ++    K S KL+P F GP+ +L+K G   Y+LDLP   K    + FHVS L+K
Subjt:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK

P0CT41 Transposon Tf2-12 polyprotein7.4e-0538.55Show/hide
Query:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK
        MK Y D K +E+  ++ G+ V +K     ++    K S KL+P F GP+ +L+K G   Y+LDLP   K    + FHVS L+K
Subjt:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK

Q9UR07 Transposon Tf2-11 polyprotein7.4e-0538.55Show/hide
Query:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK
        MK Y D K +E+  ++ G+ V +K     ++    K S KL+P F GP+ +L+K G   Y+LDLP   K    + FHVS L+K
Subjt:  MKHYADKKRREV-NYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPP--KSSIHNVFHVSQLKK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACATGAAACAATGAAGCACTATGCTGATAAAAAGAGGCGTGAAGTCAACTATGAGGTAGGCAACCAAGTTTTTCTTAAACTTAGACCCTACATACAAAGTTCCCT
AGCACGTAAGAGAAGCGAGAAATTGTCCCCCAAGTTTTTTGGCCCTTATACTATCCTGGAAAAGATTGGGGCAGTGGCCTACAAGCTTGATCTACCCCCGAAGTCTTCCA
TCCATAATGTGTTTCACGTTTCCCAGTTAAAGAAGGCTCTTGGCAAATGGGAATACTCCCAATCCGTAGCACCAATACTAACTGATGATTTTGAATGGCAATGGAACCAA
AAAAGGTATAATCGAGTTAGGGAGAAGAGGAATCCTAACATATCGCTTCTTGAATTATGTGATATAAAGAGAGTATTGAGCACCGAGAAGGGCCAATACATTGTGAAGTC
ATCGGGTGCCTTGGATAATATGGCCAAGGGGCGATGCACAGTTCGAGGCCTAGGAGTTCATGTGTTGAGGAGCAAGCTTGAGAAAGCAAGATTCCTAGATTTACTTTATC
AATATCTTCAGTTTGTTAAACGTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACATGAAACAATGAAGCACTATGCTGATAAAAAGAGGCGTGAAGTCAACTATGAGGTAGGCAACCAAGTTTTTCTTAAACTTAGACCCTACATACAAAGTTCCCT
AGCACGTAAGAGAAGCGAGAAATTGTCCCCCAAGTTTTTTGGCCCTTATACTATCCTGGAAAAGATTGGGGCAGTGGCCTACAAGCTTGATCTACCCCCGAAGTCTTCCA
TCCATAATGTGTTTCACGTTTCCCAGTTAAAGAAGGCTCTTGGCAAATGGGAATACTCCCAATCCGTAGCACCAATACTAACTGATGATTTTGAATGGCAATGGAACCAA
AAAAGGTATAATCGAGTTAGGGAGAAGAGGAATCCTAACATATCGCTTCTTGAATTATGTGATATAAAGAGAGTATTGAGCACCGAGAAGGGCCAATACATTGTGAAGTC
ATCGGGTGCCTTGGATAATATGGCCAAGGGGCGATGCACAGTTCGAGGCCTAGGAGTTCATGTGTTGAGGAGCAAGCTTGAGAAAGCAAGATTCCTAGATTTACTTTATC
AATATCTTCAGTTTGTTAAACGTTGCTAG
Protein sequenceShow/hide protein sequence
MAHETMKHYADKKRREVNYEVGNQVFLKLRPYIQSSLARKRSEKLSPKFFGPYTILEKIGAVAYKLDLPPKSSIHNVFHVSQLKKALGKWEYSQSVAPILTDDFEWQWNQ
KRYNRVREKRNPNISLLELCDIKRVLSTEKGQYIVKSSGALDNMAKGRCTVRGLGVHVLRSKLEKARFLDLLYQYLQFVKRC