; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036510 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036510
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr3:47650406..47650807
RNA-Seq ExpressionLag0036510
SyntenyLag0036510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041728.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-1442.11Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+S  + ++++Y GPITRS SK    E  Q   +A ++L+++I+S +  I   EN +     S+S +  + + PDV SVMM D  T E  MTE+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN L+K VEE+D EIT  + QI++++ AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-1442.11Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+S  + ++N+Y GPITRS SK    E  Q   +A  +L+++++S +  I   EN +     SSS +  + + PDVMSVMM D  T E  M E+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN L+K VEE+D EI  L+ Q+++++ AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.5e-1441.35Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+SK +A++++Y GPITRS SK       Q   IA  +L+++++S +  I   EN + + + S+S +  + + PDVMSVMM D    E  M E+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN+L+K+V+E+D EI  LK Q+++++ AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]4.5e-1441.35Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+SK +A++++Y GPITRS SK       Q   IA  +L+++++S +  I   EN + + + S+S +  + + PDVMSVMM D    E  M E+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN+L+K+V+E+D EI  LK Q+++++ AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]4.5e-1441.35Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+SK +A++++Y GPITRS SK       Q   IA  +L+++++S +  I   EN + + + S+S +  + + PDVMSVMM D    E  M E+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN+L+K+V+E+D EI  LK Q+++++ AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein7.4e-1542.11Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+S  + ++++Y GPITRS SK    E  Q   +A ++L+++I+S +  I   EN +     S+S +  + + PDV SVMM D  T E  MTE+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN L+K VEE+D EIT  + QI++++ AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

A0A5A7ULS4 Ty3-gypsy retrotransposon protein6.3e-1439.85Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        MTS++A+S  + ++++Y GPITR  SK    E  Q   +A  +L+++++S +  I   ENL+     S+S +  + + P++MSVMM D  T+E  M E+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +K+N L+K+VEE+D EIT L+ Q+++ + AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

A0A5A7VCU1 Ty3-gypsy retrotransposon protein8.2e-1439.85Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+S+ + +++ Y GPITR+ SK    E  Q   +   +L+++++S +  I   EN +     S+S +  +   PDVMSVMMTD  T+E  M E+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN L+K+VEE+D EIT L+ Q+++++  ESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein1.4e-1339.1Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+SK + ++++Y+GPITRS SK    E  Q   +A  +L+++++S +  I   EN +     S+S +  + + PDVMSVMM D  T E  M ++E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +K+N L+K++EE+D EIT L++Q+ +++ A+SS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.3e-1442.11Show/hide
Query:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE
        M S++A+S  + ++N+Y GPITRS SK    E  Q   +A  +L+++++S +  I   EN +     SSS +  + + PDVMSVMM D  T E  M E+E
Subjt:  MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVE

Query:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS
        +KIN L+K VEE+D EI  L+ Q+++++ AESS
Subjt:  KKINMLLKMVEEKDQEITCLKNQIKSQDVAESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGAACAAGCTTCTTCAAAGATCGCTGCTTCAAACAACTCCTATGTGGGGCCAATTACTCGCAGTTGCTCCAAGGAAACCCAACATGAAGACAGCCAAATTCC
TGTCATTGCAAACAAGATGCTGAGACGCATGATAGATTCTGCTCAACTTGAAATCGCCACTGTAGAAAATTTGATGCTTAGCAAATTCATATCTTCTTCTCAGCAACCAA
ATGAAACATCAAGTCCTGACGTGATGTCTGTTATGATGACTGATGCAAGAACTAGTGAAGAACGGATGACTGAAGTTGAGAAGAAAATCAACATGTTGCTGAAGATGGTC
GAAGAGAAAGACCAAGAAATCACCTGTCTCAAGAACCAGATAAAAAGTCAGGATGTTGCTGAATCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGAACAAGCTTCTTCAAAGATCGCTGCTTCAAACAACTCCTATGTGGGGCCAATTACTCGCAGTTGCTCCAAGGAAACCCAACATGAAGACAGCCAAATTCC
TGTCATTGCAAACAAGATGCTGAGACGCATGATAGATTCTGCTCAACTTGAAATCGCCACTGTAGAAAATTTGATGCTTAGCAAATTCATATCTTCTTCTCAGCAACCAA
ATGAAACATCAAGTCCTGACGTGATGTCTGTTATGATGACTGATGCAAGAACTAGTGAAGAACGGATGACTGAAGTTGAGAAGAAAATCAACATGTTGCTGAAGATGGTC
GAAGAGAAAGACCAAGAAATCACCTGTCTCAAGAACCAGATAAAAAGTCAGGATGTTGCTGAATCAAGTTAG
Protein sequenceShow/hide protein sequence
MTSEQASSKIAASNNSYVGPITRSCSKETQHEDSQIPVIANKMLRRMIDSAQLEIATVENLMLSKFISSSQQPNETSSPDVMSVMMTDARTSEERMTEVEKKINMLLKMV
EEKDQEITCLKNQIKSQDVAESS