; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036529 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036529
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr3:47960215..47960853
RNA-Seq ExpressionLag0036529
SyntenyLag0036529
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]4.6e-3950.5Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDT----ISAPAKTITVD------------EDQTLITLINTTLT
        S+++ SS +E+   SPI LL NI  LI +RLDS+N+VLW FQ++ +LKAHKLFG ++ T     ++P+ T TV             +DQ L+T+IN TL+
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDT----ISAPAKTITVD------------EDQTLITLINTTLT

Query:  PSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQ
        P ALAY +G T+S+QVW  L K +SS SRS++V LKSDLQ+I K    +I+ +++RIK+I +KLA VS  I++EDL IYALNGLP+ YN F+T++ TRSQ
Subjt:  PSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQ

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4356.15Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVDE----DQTLITLINTTLTPSALAYAIGCTT
        S+S  SS +E +L SPIVLL NI  LI ++LDS+NYVLW FQ++ LLKAHKLFG ++ T   P    + D+    DQ L+T+IN TL+P ALAY +G TT
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVDE----DQTLITLINTTLTPSALAYAIGCTT

Query:  SQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRS
        S+QVW+ L K +SSSSRS++V LKSDLQ+I K S  +I+ +++RIK+I +KLA VS V++ EDL IYALNGLP+ YN F+T++ TRS
Subjt:  SQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRS

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-4356.15Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVDE----DQTLITLINTTLTPSALAYAIGCTT
        S+S  SS +E +L SPIVLL NI  LI ++LDS+NYVLW FQ++ LLKAHKLFG ++ T   P    + D+    DQ L+T+IN TL+P ALAY +G TT
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVDE----DQTLITLINTTLTPSALAYAIGCTT

Query:  SQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRS
        S+QVW+ L K +SSSSRS++V LKSDLQ+I K S  +I+ +++RIK+I +KLA VS V++ EDL IYALNGLP+ YN F+T++ TRS
Subjt:  SQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRS

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.0e-3848.51Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT
        S+++ SS +E+   SPI LL NI  LI +RLDS+N+VLW FQ++ +LKAHKL+G ++ T   P +T                    + +DQ L+T+IN T
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT

Query:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR
        L+P ALAY +G T+S+QVW  L K +SS SRS++V LKSDLQ+I K    +I+ +++RIK+I +KLA VS  I++EDL IYALNGLP+ YN F+T++ TR
Subjt:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR

Query:  SQ
        SQ
Subjt:  SQ

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]4.6e-3950.5Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDT----ISAPAKTITVD------------EDQTLITLINTTLT
        S+++ SS +E+   SPI LL NI  LI +RLDS+N+VLW FQ++ +LKAHKLFG ++ T     ++P+ T TV             +DQ L+T+IN TL+
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDT----ISAPAKTITVD------------EDQTLITLINTTLT

Query:  PSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQ
        P ALAY +G T+S+QVW  L K +SS SRS++V LKSDLQ+I K    +I+ +++RIK+I +KLA VS  I++EDL IYALNGLP+ YN F+T++ TRSQ
Subjt:  PSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQ

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X24.9e-3948.51Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT
        S+++ SS +E+   SPI LL NI  LI +RLDS+N+VLW FQ++ +LKAHKL+G ++ T   P +T                    + +DQ L+T+IN T
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT

Query:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR
        L+P ALAY +G T+S+QVW  L K +SS SRS++V LKSDLQ+I K    +I+ +++RIK+I +KLA VS  I++EDL IYALNGLP+ YN F+T++ TR
Subjt:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR

Query:  SQ
        SQ
Subjt:  SQ

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X34.9e-3948.51Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT
        S+++ SS +E+   SPI LL NI  LI +RLDS+N+VLW FQ++ +LKAHKL+G ++ T   P +T                    + +DQ L+T+IN T
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT

Query:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR
        L+P ALAY +G T+S+QVW  L K +SS SRS++V LKSDLQ+I K    +I+ +++RIK+I +KLA VS  I++EDL IYALNGLP+ YN F+T++ TR
Subjt:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR

Query:  SQ
        SQ
Subjt:  SQ

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X14.9e-3948.51Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT
        S+++ SS +E+   SPI LL NI  LI +RLDS+N+VLW FQ++ +LKAHKL+G ++ T   P +T                    + +DQ L+T+IN T
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT

Query:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR
        L+P ALAY +G T+S+QVW  L K +SS SRS++V LKSDLQ+I K    +I+ +++RIK+I +KLA VS  I++EDL IYALNGLP+ YN F+T++ TR
Subjt:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR

Query:  SQ
        SQ
Subjt:  SQ

A0A5D3CLI6 T4.54.9e-3948.51Show/hide
Query:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT
        S+++ SS +E+   SPI LL NI  LI +RLDS+N+VLW FQ++ +LKAHKL+G ++ T   P +T                    + +DQ L+T+IN T
Subjt:  SSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT------------------VDEDQTLITLINTT

Query:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR
        L+P ALAY +G T+S+QVW  L K +SS SRS++V LKSDLQ+I K    +I+ +++RIK+I +KLA VS  I++EDL IYALNGLP+ YN F+T++ TR
Subjt:  LTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTR

Query:  SQ
        SQ
Subjt:  SQ

A0A6J1E049 uncharacterized protein LOC1110251504.9e-3947.76Show/hide
Query:  SSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT--------------------VDEDQTLITLINTTLTP
        SS   + LSSPI LL NI  L+ +RLDSSN+VLW FQ++ +LKAHKL+G ++ +   PA+ +                     + +D  L+TL+N  L+ 
Subjt:  SSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTIT--------------------VDEDQTLITLINTTLTP

Query:  SALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQN
        SALAY +GC +SQQVW  L KH+SSSSR+++V LKSDLQSI K    +I+ +VQRIK++ +KLA V V++D EDL IY LN LP  +N F+T++ TRSQ+
Subjt:  SALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQN

Query:  L
        +
Subjt:  L

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-0526.54Show/hide
Query:  SNYVLWNFQVSPLLKAHKLFGVLE------DTISAPAKTITVDEDQTLITLINTTLTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSIL
        + +  W  ++  LL    L  VL+      DT+ A       D D+   + I   L+   +   I   T++ +W+RLE  + S + ++ + LK  L ++ 
Subjt:  SNYVLWNFQVSPLLKAHKLFGVLE------DTISAPAKTITVDEDQTLITLINTTLTPSALAYAIGCTTSQQVWSRLEKHFSSSSRSHIVGLKSDLQSIL

Query:  KLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQNLPLK
                 H+     ++ +LA + V I++ED AI  LN LPSSY+   TT+      + LK
Subjt:  KLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQNLPLK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-0824.32Show/hide
Query:  LMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVD--------------EDQTLITLINTTLTPSALAYAIGCTTSQQVWSRLE
        ++N+N+  + +L S+NY++W+ QV  L   ++L G L+ + + P  TI  D              +D+ + + +   ++ S        TT+ Q+W  L 
Subjt:  LMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVD--------------EDQTLITLINTTLTPSALAYAIGCTTSQQVWSRLE

Query:  KHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYN------VFKTTVPTRSQ
        K +++ S  H+  L++ L+   K  T TI+ ++Q +    ++LA++   +D ++     L  LP  Y         K T PT ++
Subjt:  KHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYN------VFKTTVPTRSQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.0e-0425.22Show/hide
Query:  LMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVD--------------EDQTLITLINTTLTPSALAYAIGCTTSQQVWSRLE
        ++N+N+  + +L S+NY++W+ QV  L   ++L G L+ +   P  TI  D              +D+ + + I   ++ S        TT+ Q+W  L 
Subjt:  LMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVD--------------EDQTLITLINTTLTPSALAYAIGCTTSQQVWSRLE

Query:  KHFSSSSRSHIVGLK
        K +++ S  H+  L+
Subjt:  KHFSSSSRSHIVGLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAGTTGGAAGTTCTTCGATAATTTCTTCTCCATCTGAACAATCTCTGAGTTCGCCAATCGTTCTTTTGATGAACATCAACATTCTCATCATTGTTCGTCTGGA
TTCATCCAATTATGTTTTATGGAATTTTCAAGTTTCTCCTCTTCTCAAGGCACACAAACTCTTTGGAGTTCTTGAGGACACAATCTCAGCTCCTGCGAAGACAATTACGG
TTGATGAAGATCAGACATTGATTACACTCATCAACACAACGTTGACTCCTTCGGCTCTTGCCTATGCTATTGGCTGCACAACTTCGCAACAGGTCTGGTCTCGATTGGAA
AAACACTTTTCTTCTTCCTCTCGATCGCACATTGTCGGTCTCAAATCAGATCTGCAGAGTATTTTGAAATTATCTACTGTAACAATCAATGTCCATGTTCAACGAATCAA
AGATATTGTGAACAAGCTTGCGGTTGTTTCAGTTGTAATCGATCAAGAGGACCTTGCAATTTATGCGCTAAATGGCCTCCCTTCCTCCTATAATGTTTTTAAGACCACTG
TTCCTACAAGATCTCAGAATCTCCCTCTGAAGAGCTTCATGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAGTTGGAAGTTCTTCGATAATTTCTTCTCCATCTGAACAATCTCTGAGTTCGCCAATCGTTCTTTTGATGAACATCAACATTCTCATCATTGTTCGTCTGGA
TTCATCCAATTATGTTTTATGGAATTTTCAAGTTTCTCCTCTTCTCAAGGCACACAAACTCTTTGGAGTTCTTGAGGACACAATCTCAGCTCCTGCGAAGACAATTACGG
TTGATGAAGATCAGACATTGATTACACTCATCAACACAACGTTGACTCCTTCGGCTCTTGCCTATGCTATTGGCTGCACAACTTCGCAACAGGTCTGGTCTCGATTGGAA
AAACACTTTTCTTCTTCCTCTCGATCGCACATTGTCGGTCTCAAATCAGATCTGCAGAGTATTTTGAAATTATCTACTGTAACAATCAATGTCCATGTTCAACGAATCAA
AGATATTGTGAACAAGCTTGCGGTTGTTTCAGTTGTAATCGATCAAGAGGACCTTGCAATTTATGCGCTAAATGGCCTCCCTTCCTCCTATAATGTTTTTAAGACCACTG
TTCCTACAAGATCTCAGAATCTCCCTCTGAAGAGCTTCATGTTTTGA
Protein sequenceShow/hide protein sequence
MASVGSSSIISSPSEQSLSSPIVLLMNINILIIVRLDSSNYVLWNFQVSPLLKAHKLFGVLEDTISAPAKTITVDEDQTLITLINTTLTPSALAYAIGCTTSQQVWSRLE
KHFSSSSRSHIVGLKSDLQSILKLSTVTINVHVQRIKDIVNKLAVVSVVIDQEDLAIYALNGLPSSYNVFKTTVPTRSQNLPLKSFMF