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Lag0036536 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036536
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr3:48136352..48139307
RNA-Seq ExpressionLag0036536
SyntenyLag0036536
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026156.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-2166.28Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY
        FGLTNAPAVFMDLMNR+F+EFLD FV VFIDDILIYSKTE E+E+HLR VL TLR N+LYAKFSKY ++   ++   S  S  + +
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY

KAA0057168.1 pol protein [Cucumis melo var. makuwa]4.6e-2184.62Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK
        FGLTNAPAVFMDLMNR+FK+FLD+FV VFIDDILIYSKTE EHE+HLR+VL TLR N LYAKFSK
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK

KAA0058942.1 pol protein [Cucumis melo var. makuwa]4.6e-2184.62Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK
        FGLTNAPAVFMDLMNR+FK+FLD+FV VFIDDILIYSKTE EHE+HLR+VL TLR N LYAKFSK
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK

TYK11616.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-2166.28Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY
        FGLTNAPAVFMDLMNR+F+EFLD FV VFIDDILIYSKTE E+E+HLR VL TLR N+LYAKFSKY ++   ++   S  S  + +
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY

TYK19164.1 pol protein [Cucumis melo var. makuwa]4.6e-2181.82Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKY
        FGLTNAPAVFMDLMNR+FK+FLD+FV VFIDDIL+YSKTE EHE+HLR+VL TLR N LYAKFSK+
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKY

TrEMBL top hitse value%identityAlignment
A0A5A7SK26 Reverse transcriptase1.0e-2166.28Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY
        FGLTNAPAVFMDLMNR+F+EFLD FV VFIDDILIYSKTE E+E+HLR VL TLR N+LYAKFSKY ++   ++   S  S  + +
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY

A0A5A7UPX4 Pol protein2.2e-2184.62Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK
        FGLTNAPAVFMDLMNR+FK+FLD+FV VFIDDILIYSKTE EHE+HLR+VL TLR N LYAKFSK
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK

A0A5A7USS4 Pol protein2.2e-2184.62Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK
        FGLTNAPAVFMDLMNR+FK+FLD+FV VFIDDILIYSKTE EHE+HLR+VL TLR N LYAKFSK
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK

A0A5D3CMG5 Reverse transcriptase1.0e-2166.28Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY
        FGLTNAPAVFMDLMNR+F+EFLD FV VFIDDILIYSKTE E+E+HLR VL TLR N+LYAKFSKY ++   ++   S  S  + +
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKY

A0A5D3D6H0 Pol protein2.2e-2181.82Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKY
        FGLTNAPAVFMDLMNR+FK+FLD+FV VFIDDIL+YSKTE EHE+HLR+VL TLR N LYAKFSK+
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKY

SwissProt top hitse value%identityAlignment
P19199 Polyprotein P38.8e-0741.43Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDT
        FGL NAPA+F   M+ +FK   + F+ V+IDDIL++S+T E+H  HL  +L   + N L    +K  + T
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDT

P31843 RNA-directed DNA polymerase homolog7.4e-0652.83Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDIL---IYSKTEEEHEDHLRRV
        FGLTNA A F +LMN +  E+LD FV V++DD++   IYS +  EH  HLR V
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDIL---IYSKTEEEHEDHLRRV

Q89703 Putative enzymatic polyprotein1.5e-0646.94Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRR
        FG  N+P++F   M+R+F+ + D F+ V+IDDIL++SKT EEH+ H+ +
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.0e-0636.71Show/hide
Query:  RRVFGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK-YNLDTHANFL
        R  FGL NAPA+F  +++ + +E +    +V+IDDI+++S+  + H  +LR VL +L    L     K + LDT   FL
Subjt:  RRVFGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK-YNLDTHANFL

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.8e-0544.62Show/hide
Query:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK
        FGL NAP+ F   M   F++    FV V++DDILI+S++ EEH  HL  VL  L+   L  K  K
Subjt:  FGLTNAPAVFMDLMNRLFKEFLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAACAAGAAGCAACACGACGAGCCGCCACCGCAAGATCGCCCCTCCATCGTCTACAGTCGCGCTTCCCTCCTCCGTTCACGCTCGTCGCATGTCGTCGCCGT
CTACTCTGTCATCGCCGCCGATGAGTTTTTTTTTCTCTCTCCCGCTTCTGTCTCCCTTAGTCTCAACTCTCTCTCTCTCTCTCTCATCTGCAGAAACGACGAGCCGTCGC
CACTTCTCTTCTTCGGTCATTGTCGCGAATCCCCGCCGCCGCGTCGTGTATTTGGACTTACTAATGCTCCTGCAGTTTTCATGGACTTGATGAACAGGTTATTTAAGGAG
TTCCTCGATGCGTTCGTATTTGTCTTCATTGATGATATCCTTATCTATTCCAAGACAGAAGAGGAACATGAGGATCATCTCAGAAGAGTTTTGATCACCTTAAGAATGAA
CGAGTTGTATGCAAAATTCTCTAAATATAACTTGGACACGCATGCCAATTTCTTGGAGAGGTCAGCCTCATCAGCCTATAAGAAGTATCCATCTGTCCAAGAGAAGGGAG
AGGGGGTTTTCGAAGAGGAGAGAAGATCAAAAACAAGAGGCCAGAGATTAGAAGAAAGGATACCGCCGCAGGGTAGACTTGTATTGCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAACAAGAAGCAACACGACGAGCCGCCACCGCAAGATCGCCCCTCCATCGTCTACAGTCGCGCTTCCCTCCTCCGTTCACGCTCGTCGCATGTCGTCGCCGT
CTACTCTGTCATCGCCGCCGATGAGTTTTTTTTTCTCTCTCCCGCTTCTGTCTCCCTTAGTCTCAACTCTCTCTCTCTCTCTCTCATCTGCAGAAACGACGAGCCGTCGC
CACTTCTCTTCTTCGGTCATTGTCGCGAATCCCCGCCGCCGCGTCGTGTATTTGGACTTACTAATGCTCCTGCAGTTTTCATGGACTTGATGAACAGGTTATTTAAGGAG
TTCCTCGATGCGTTCGTATTTGTCTTCATTGATGATATCCTTATCTATTCCAAGACAGAAGAGGAACATGAGGATCATCTCAGAAGAGTTTTGATCACCTTAAGAATGAA
CGAGTTGTATGCAAAATTCTCTAAATATAACTTGGACACGCATGCCAATTTCTTGGAGAGGTCAGCCTCATCAGCCTATAAGAAGTATCCATCTGTCCAAGAGAAGGGAG
AGGGGGTTTTCGAAGAGGAGAGAAGATCAAAAACAAGAGGCCAGAGATTAGAAGAAAGGATACCGCCGCAGGGTAGACTTGTATTGCGTTAG
Protein sequenceShow/hide protein sequence
MKKNKKQHDEPPPQDRPSIVYSRASLLRSRSSHVVAVYSVIAADEFFFLSPASVSLSLNSLSLSLICRNDEPSPLLFFGHCRESPPPRRVFGLTNAPAVFMDLMNRLFKE
FLDAFVFVFIDDILIYSKTEEEHEDHLRRVLITLRMNELYAKFSKYNLDTHANFLERSASSAYKKYPSVQEKGEGVFEEERRSKTRGQRLEERIPPQGRLVLR