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Lag0036543 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036543
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:48272670..48273724
RNA-Seq ExpressionLag0036543
SyntenyLag0036543
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_026392816.1 uncharacterized protein LOC113288087 [Papaver somniferum]9.7e-1546.36Show/hide
Query:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEEVS--ENVSALLSEDLPVKCFDPGMFTLPCMIGDY---TPNPDHHPSSATILLGRPFVK
        LDV R++ VNIPL++ I K+P Y + LK     K+   G E +S  EN S++L   LP+KC DPG F +P  I D+     N     SS  +LLGRPF+K
Subjt:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEEVS--ENVSALLSEDLPVKCFDPGMFTLPCMIGDY---TPNPDHHPSSATILLGRPFVK

Query:  TVKTVIDVDE
        T K VIDVD+
Subjt:  TVKTVIDVDE

XP_027063052.1 uncharacterized protein LOC113689482 [Coffea arabica]9.7e-1540.29Show/hide
Query:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIG-----
        +P+ F   +  S + D     L+VFR+V++NIPLL+AI ++P Y +FL+     +    G E   V ENVSA+L   LP KC DPGMFT+PC IG     
Subjt:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIG-----

Query:  ----DYTPNPDHHPSS--ATILLGRPFVKTVKTVIDVDE
            D   + +  P S   ++ LGRPF+ T +T IDV++
Subjt:  ----DYTPNPDHHPSS--ATILLGRPFVKTVKTVIDVDE

XP_027076975.1 uncharacterized protein LOC113700718 [Coffea arabica]1.9e-1535.62Show/hide
Query:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIGD----
        +P  F+  +  S + D     L+VFR+V++NIPLL+AI ++P Y +FL+  Y  ++   G E   V ENVSA+L   LP KC DP MFT+PC IG+    
Subjt:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIGD----

Query:  ----------------------------YTPNPDHHPSSATILLGRPFVKTVKTVIDVDE
                                       + DH P  + +LLGRPF+ T +T IDV++
Subjt:  ----------------------------YTPNPDHHPSSATILLGRPFVKTVKTVIDVDE

XP_040368214.1 uncharacterized protein LOC121050876 [Rosa chinensis]8.7e-1636.36Show/hide
Query:  KSSIASDKFSSFDSLIMNSFLVSPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKE--EVSENVSALLSEDL
        K  +  +  +SF+S+I N    SP+ F    T S +++     L+ F++V++NIPLLEAI +IP Y +FLK     +  +  KE  +VSENVSA+L   +
Subjt:  KSSIASDKFSSFDSLIMNSFLVSPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKE--EVSENVSALLSEDL

Query:  PVKCFDPGMFTLPCMIGD---------------------------YTPNPDHHPSSAT-ILLGRPFVKTVKTVIDV
        P KC DPG F++PC+IG                            Y    +  P S T +LLGRPF++T +T IDV
Subjt:  PVKCFDPGMFTLPCMIGD---------------------------YTPNPDHHPSSAT-ILLGRPFVKTVKTVIDV

XP_042754292.1 uncharacterized protein LOC122196043 [Lactuca sativa]1.3e-1645.61Show/hide
Query:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKE--EVSENVSALLSEDLPVKCFDPGMFTLPCMIG---------DYTPNPDHHPSSATILL
        + +F++V +NIPLLEAI  +P Y  FLK  +   + S G +   V ENVS +L + +P+KC DPG+FT+PC +G         D     D  PSS++ILL
Subjt:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKE--EVSENVSALLSEDLPVKCFDPGMFTLPCMIG---------DYTPNPDHHPSSATILL

Query:  GRPFVKTVKTVIDV
        GR F+KT KT IDV
Subjt:  GRPFVKTVKTVIDV

TrEMBL top hitse value%identityAlignment
A0A2G9GWR1 Retrotrans_gag domain-containing protein6.8e-1438.67Show/hide
Query:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKE--EVSENVSALLSEDLPVKCFDPGMFTLPCMIGD-------------------------
        L+ FR+V+VNI LL AI +IP Y +FLK  Y  K+   G E   V EN+SA+L   LP KC DPGMF++PC IG                          
Subjt:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKE--EVSENVSALLSEDLPVKCFDPGMFTLPCMIGD-------------------------

Query:  ----------------YTPN--PDHHPSSATILLGRPFVKTVKTVIDVDE
                        Y  N   D+ P S  ILLGRPF++T +T IDV E
Subjt:  ----------------YTPN--PDHHPSSATILLGRPFVKTVKTVIDVDE

A0A6P6SC24 uncharacterized protein LOC1136894824.7e-1540.29Show/hide
Query:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIG-----
        +P+ F   +  S + D     L+VFR+V++NIPLL+AI ++P Y +FL+     +    G E   V ENVSA+L   LP KC DPGMFT+PC IG     
Subjt:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIG-----

Query:  ----DYTPNPDHHPSS--ATILLGRPFVKTVKTVIDVDE
            D   + +  P S   ++ LGRPF+ T +T IDV++
Subjt:  ----DYTPNPDHHPSS--ATILLGRPFVKTVKTVIDVDE

A0A6P6TG20 uncharacterized protein LOC1137007189.4e-1635.62Show/hide
Query:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIGD----
        +P  F+  +  S + D     L+VFR+V++NIPLL+AI ++P Y +FL+  Y  ++   G E   V ENVSA+L   LP KC DP MFT+PC IG+    
Subjt:  SPVKFTEPVTPSVQND-----LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIGD----

Query:  ----------------------------YTPNPDHHPSSATILLGRPFVKTVKTVIDVDE
                                       + DH P  + +LLGRPF+ T +T IDV++
Subjt:  ----------------------------YTPNPDHHPSSATILLGRPFVKTVKTVIDVDE

A0A6P6W119 uncharacterized protein LOC1137289231.2e-1344.86Show/hide
Query:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIGDYTPNPDHHPSSATILLGRPFVKTVK
        L+VFR+V++NIPLL+AI+++P Y +FL+     ++   G E   V ENVSA+L   LP KC DP  F +  M  DY+P+P      + +LLGRPF  T +
Subjt:  LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEE--VSENVSALLSEDLPVKCFDPGMFTLPCMIGDYTPNPDHHPSSATILLGRPFVKTVK

Query:  TVIDVDE
        T IDV++
Subjt:  TVIDVDE

A0A6P6X3M4 uncharacterized protein LOC1137373671.2e-1350.53Show/hide
Query:  LVSPVKFTEPVTPSVQND---LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEEVS--ENVSALLSEDLPVKCFDPGMFTLPCMIG
        L S  +  EP T  V+ +   LDVFR++++NIPLL+AI +IP Y +FLK     K    G E V+  ENVSA+L + LP KC DPGMFT+PC IG
Subjt:  LVSPVKFTEPVTPSVQND---LDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEEVS--ENVSALLSEDLPVKCFDPGMFTLPCMIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGCGGAGTAGCCACACCTGACTGTCTCCCTGGATTCCCCACTGTTTTTTATAAATCTTCTATTGCTTCTGATAAATTTTCTTCTTTTGATTCACTTATTATGAA
TTCTTTTCTTGTTTCACCTGTGAAATTTACTGAACCTGTTACTCCAAGTGTGCAGAATGATTTAGATGTTTTTAGGCGAGTCAAGGTGAACATCCCATTACTTGAGGCAA
TCTTGAAAATACCAGCCTACACCGAGTTCCTCAAAACTTGGTACGAAGTTAAAGAGAATTCCTCAGGTAAAGAAGAGGTTAGTGAGAATGTAAGTGCATTATTGTCTGAA
GACTTACCTGTAAAATGTTTTGATCCTGGCATGTTTACTTTACCGTGTATGATTGGGGATTACACCCCTAATCCTGATCACCATCCATCTTCTGCTACGATACTTCTTGG
TCGTCCCTTTGTGAAGACTGTCAAGACAGTTATTGATGTAGATGAGGTGAATGATCGTACATTAAATTCTAAATCATGCATGGTTACTGATAATGAGATGCATTCATCTG
TCATTAGATGCCCCGACATAGAAGGTGAACTGTTTGATGTAGTTGACGAGCACCAAATAACTTTTACTGATAAATCTAGTGGGGTCACCAAGTGCTCATCTTCTAAACTC
AGGGCTGAACGAATCTTCTGTCAACCCACTTATGCTTCCAATATTTTTTCTACTTTTACTAATTCTTCTCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGCGGAGTAGCCACACCTGACTGTCTCCCTGGATTCCCCACTGTTTTTTATAAATCTTCTATTGCTTCTGATAAATTTTCTTCTTTTGATTCACTTATTATGAA
TTCTTTTCTTGTTTCACCTGTGAAATTTACTGAACCTGTTACTCCAAGTGTGCAGAATGATTTAGATGTTTTTAGGCGAGTCAAGGTGAACATCCCATTACTTGAGGCAA
TCTTGAAAATACCAGCCTACACCGAGTTCCTCAAAACTTGGTACGAAGTTAAAGAGAATTCCTCAGGTAAAGAAGAGGTTAGTGAGAATGTAAGTGCATTATTGTCTGAA
GACTTACCTGTAAAATGTTTTGATCCTGGCATGTTTACTTTACCGTGTATGATTGGGGATTACACCCCTAATCCTGATCACCATCCATCTTCTGCTACGATACTTCTTGG
TCGTCCCTTTGTGAAGACTGTCAAGACAGTTATTGATGTAGATGAGGTGAATGATCGTACATTAAATTCTAAATCATGCATGGTTACTGATAATGAGATGCATTCATCTG
TCATTAGATGCCCCGACATAGAAGGTGAACTGTTTGATGTAGTTGACGAGCACCAAATAACTTTTACTGATAAATCTAGTGGGGTCACCAAGTGCTCATCTTCTAAACTC
AGGGCTGAACGAATCTTCTGTCAACCCACTTATGCTTCCAATATTTTTTCTACTTTTACTAATTCTTCTCTGTAG
Protein sequenceShow/hide protein sequence
MWSGVATPDCLPGFPTVFYKSSIASDKFSSFDSLIMNSFLVSPVKFTEPVTPSVQNDLDVFRRVKVNIPLLEAILKIPAYTEFLKTWYEVKENSSGKEEVSENVSALLSE
DLPVKCFDPGMFTLPCMIGDYTPNPDHHPSSATILLGRPFVKTVKTVIDVDEVNDRTLNSKSCMVTDNEMHSSVIRCPDIEGELFDVVDEHQITFTDKSSGVTKCSSSKL
RAERIFCQPTYASNIFSTFTNSSL