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Lag0036545 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036545
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:48281440..48282335
RNA-Seq ExpressionLag0036545
SyntenyLag0036545
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAH93942.1 Os07g0501200 [Oryza sativa Japonica Group]3.5e-3840.1Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLSTG
        M FR    FNQ +L +Q+WRI+ N NS+  + L+ KYF +G+ ++   G +SS  W+ I +G EL  KG  WRVGN + I I +DPW+ R  + RP++  
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLSTG

Query:  -----KWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR
             KWV  LL+DN EW  + IQQ F+  D   I  I        D + W  DK G FSV+SAY LA+ + ++  +S S     SK WK +W+  +  +
Subjt:  -----KWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR

Query:  TKICAWK
         KI AWK
Subjt:  TKICAWK

EEC83100.1 hypothetical protein OsI_28249 [Oryza sativa Indica Group]2.1e-3840.1Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPL---
        M FR    FNQ +L +QSWRI++ P S+  + L+ KYF +G+ ++     ++S  WR I +G EL  +G  WRVGN   I I +DPWI R  + RP+   
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPL---

Query:  --STGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR
          S  KWVS LLD N EW    IQQ F P D   I +I T   +  D + W  DK G FSV+SAY LA+ + +++ +S S   + SK W  +W   V  +
Subjt:  --STGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR

Query:  TKICAWK
         +I  W+
Subjt:  TKICAWK

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]1.0e-3741.88Show/hide
Query:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLS----
        FR LS FNQ ++ KQSWRII+ P S++ + ++ KYF+   F+EA +G++ S  WRSI WGRE+  KG  WR+ +  L+ + +  W+ RP   +P+S    
Subjt:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLS----

Query:  -TGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIW
             VS L+D+++ WR D I++ F  +DA  I  IP   + S D++ W  DK+GN+SVKS Y+LA+++K     S S   KSS  W SIW
Subjt:  -TGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIW

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]2.3e-3745.61Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLST-
        M FR +S FNQ ML KQSWRI+++P+S++ KTLRGKYFK G+FL+A +G   S +WRSI WGR+LF KG+ W+VGN   I +  DPW+ R GN  P+ T 
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLST-

Query:  ----GKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEI
               V+ L++    W +  ++++F   +A  I   P   ++  DEI W +DK G FSV+SAY L I++
Subjt:  ----GKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEI

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]4.6e-3838.65Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLS--
        M FR LS FNQ ++ KQ WRI++ P+S++ + L+ +YFK   F+ A +G+  S  WRSI WGR++  KG  WR+GN   + +  + WI RP   +P+S  
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLS--

Query:  ---TGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR
           T   V+ L+D+  +WR+DLI Q F P+DA  I  IP   +   D++ W  DK+G +SVKS Y++A+ IK     S S++ ++   W+ IW   +  +
Subjt:  ---TGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR

Query:  TKICAWK
         KI  W+
Subjt:  TKICAWK

TrEMBL top hitse value%identityAlignment
A0A1S8ACU2 Ribonuclease H-like superfamily protein1.0e-3841.46Show/hide
Query:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLSTGK-
        FR ++ FNQ ++ KQSWRIIK P S++ K L+ KYFK  +FL+A +G+  S  WRSI WGR++ V G  WR+G  + + I K  WI RP   +P+S    
Subjt:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLSTGK-

Query:  ----WVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPRTK
             V+ L+D+N +W++ LIQQ F+ +DA  I+ I        D+I W  DK+GN+SVKS Y++A+ IK    A  S +S +   W  IW   +  + K
Subjt:  ----WVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPRTK

Query:  ICAWK
        I  WK
Subjt:  ICAWK

A0A2N9EDG5 CCHC-type domain-containing protein5.0e-3840.19Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPW-INRP-----GNP
        M FR+LS FN  ML KQ WR+++ PNS++ + L+ KY+ +  FLEA I  + SL WRSIC  + + + G  WRVGN   I I KDPW I  P       P
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPW-INRP-----GNP

Query:  RPLSTGKWVSCLLD-DNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVL
        R L     VS L++ +   W  +LI Q FSP DA  I  IP   +  +D++ W  ++RG FSVKSAYR+ ++ K  + ++ S      KFW  +W + V 
Subjt:  RPLSTGKWVSCLLD-DNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVL

Query:  PRTKICAWK
        P+ +   W+
Subjt:  PRTKICAWK

A0A803QH07 Uncharacterized protein1.7e-3839.81Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLS--
        M FR    FNQ +L KQ+WRI   P+S++ + L+ +YF   +FL+A IG+S S +W+SICWGREL +KG  ++VGN + I   KDPWI    + RP+S  
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLS--

Query:  --TGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPRT
              VS L++DN EW   L+   F P D   I +IP     ++D + W     G+++VKS + LA  ++D L +S SD ++   +WK  W+  + P+ 
Subjt:  --TGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPRT

Query:  KICAWK
        +I AWK
Subjt:  KICAWK

B8BBX0 Reverse transcriptase domain-containing protein1.0e-3840.1Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPL---
        M FR    FNQ +L +QSWRI++ P S+  + L+ KYF +G+ ++     ++S  WR I +G EL  +G  WRVGN   I I +DPWI R  + RP+   
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPL---

Query:  --STGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR
          S  KWVS LLD N EW    IQQ F P D   I +I T   +  D + W  DK G FSV+SAY LA+ + +++ +S S   + SK W  +W   V  +
Subjt:  --STGKWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR

Query:  TKICAWK
         +I  W+
Subjt:  TKICAWK

C7J4L5 Os07g0501200 protein1.7e-3840.1Show/hide
Query:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLSTG
        M FR    FNQ +L +Q+WRI+ N NS+  + L+ KYF +G+ ++   G +SS  W+ I +G EL  KG  WRVGN + I I +DPW+ R  + RP++  
Subjt:  MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLSTG

Query:  -----KWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR
             KWV  LL+DN EW  + IQQ F+  D   I  I        D + W  DK G FSV+SAY LA+ + ++  +S S     SK WK +W+  +  +
Subjt:  -----KWVSCLLDDNNEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPR

Query:  TKICAWK
         KI AWK
Subjt:  TKICAWK

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003102.0e-1239.53Show/hide
Query:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWI
        FR L +FNQ +L KQS+RII  P++++ + LR +YF   + +E  +G   S +WRSI  GREL  +G    +G+     +  D WI
Subjt:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWI

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.6e-2026.98Show/hide
Query:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINR------------
        F+ +  FN  +L KQ WR++  P S++ K  + +YF   + L AP+G+  S  W+SI   +E+  +G    VGN   I I +  W++             
Subjt:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINR------------

Query:  -PGNPRPLSTGKWVSCLLDDN-NEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKS-SKFWKSI
         P     +S+   VS L+D++  EWR+D+I+  F   +   I  +  G +   D   W     G+++VKS Y +  +I +   +    +  S +  ++ I
Subjt:  -PGNPRPLSTGKWVSCLLDDN-NEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKS-SKFWKSI

Query:  WDSGVLPRTKICAWK
        W S   P+ +   WK
Subjt:  WDSGVLPRTKICAWK

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-1339.53Show/hide
Query:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWI
        FR L +FNQ +L KQS+RII  P++++ + LR +YF   + +E  +G   S +WRSI  GREL  +G    +G+     +  D WI
Subjt:  FRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTCAGGCAATTATCCTTTTTCAACCAAGGTATGCTAATAAAGCAAAGTTGGAGAATCATTAAAAACCCCAATAGTATCATTTTCAAAACGCTAAGAGGAAAATA
CTTCAAGGACGGGAACTTTCTCGAGGCCCCAATAGGCAATTCTTCGTCCTTGTCATGGAGAAGTATTTGTTGGGGTCGAGAGCTGTTTGTAAAAGGATTCGGTTGGAGAG
TAGGGAACAGAAATCTCATCACAATTGACAAAGATCCTTGGATCAACCGACCAGGCAACCCTCGCCCCCTTTCCACGGGCAAATGGGTATCTTGCCTTCTTGACGACAAC
AACGAATGGAGACAGGACTTAATCCAGCAAGCGTTTAGTCCCCAAGACGCTCTTGATATTGCCAATATTCCTACTGGGGACAAAAACTCTAGAGATGAGATTTACTGGCG
ACTGGACAAAAGAGGGAACTTCTCAGTTAAGAGTGCATATCGTCTTGCAATCGAGATTAAAGACCTCCTAGGAGCCTCGCACTCGGACAACAGCAAATCATCCAAGTTTT
GGAAGAGCATTTGGGACTCTGGGGTGCTCCCTAGGACCAAAATTTGTGCTTGGAAAGATCAAATGGTCGACGAAGGACTATTGAAATTGGATGGTGGACCAATGGGGAAA
GGAGGATCTGGACAGGAGCCTAATCTTAATTTGGAAGATTTGGCACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTCAGGCAATTATCCTTTTTCAACCAAGGTATGCTAATAAAGCAAAGTTGGAGAATCATTAAAAACCCCAATAGTATCATTTTCAAAACGCTAAGAGGAAAATA
CTTCAAGGACGGGAACTTTCTCGAGGCCCCAATAGGCAATTCTTCGTCCTTGTCATGGAGAAGTATTTGTTGGGGTCGAGAGCTGTTTGTAAAAGGATTCGGTTGGAGAG
TAGGGAACAGAAATCTCATCACAATTGACAAAGATCCTTGGATCAACCGACCAGGCAACCCTCGCCCCCTTTCCACGGGCAAATGGGTATCTTGCCTTCTTGACGACAAC
AACGAATGGAGACAGGACTTAATCCAGCAAGCGTTTAGTCCCCAAGACGCTCTTGATATTGCCAATATTCCTACTGGGGACAAAAACTCTAGAGATGAGATTTACTGGCG
ACTGGACAAAAGAGGGAACTTCTCAGTTAAGAGTGCATATCGTCTTGCAATCGAGATTAAAGACCTCCTAGGAGCCTCGCACTCGGACAACAGCAAATCATCCAAGTTTT
GGAAGAGCATTTGGGACTCTGGGGTGCTCCCTAGGACCAAAATTTGTGCTTGGAAAGATCAAATGGTCGACGAAGGACTATTGAAATTGGATGGTGGACCAATGGGGAAA
GGAGGATCTGGACAGGAGCCTAATCTTAATTTGGAAGATTTGGCACTTTAG
Protein sequenceShow/hide protein sequence
MRFRQLSFFNQGMLIKQSWRIIKNPNSIIFKTLRGKYFKDGNFLEAPIGNSSSLSWRSICWGRELFVKGFGWRVGNRNLITIDKDPWINRPGNPRPLSTGKWVSCLLDDN
NEWRQDLIQQAFSPQDALDIANIPTGDKNSRDEIYWRLDKRGNFSVKSAYRLAIEIKDLLGASHSDNSKSSKFWKSIWDSGVLPRTKICAWKDQMVDEGLLKLDGGPMGK
GGSGQEPNLNLEDLAL